Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96684 | Canola | extracellular | 97.7 | 97.7 |
| CDX83795 | Canola | extracellular | 94.25 | 94.25 |
| CDX89668 | Canola | extracellular | 39.08 | 49.28 |
| AT4G30064.1 | Thale cress | extracellular | 43.68 | 48.72 |
| CDX89666 | Canola | extracellular | 40.23 | 47.95 |
| CDY69877 | Canola | extracellular | 37.93 | 47.83 |
| AT2G29045.1 | Thale cress | extracellular | 42.53 | 47.44 |
| CDX91173 | Canola | extracellular | 40.23 | 47.3 |
| CDY70383 | Canola | extracellular | 39.08 | 46.58 |
| CDX80652 | Canola | extracellular | 39.08 | 45.33 |
| CDY39762 | Canola | extracellular | 40.23 | 44.3 |
| CDY43552 | Canola | extracellular | 39.08 | 43.59 |
| CDY69362 | Canola | extracellular | 37.93 | 42.31 |
| CDX91571 | Canola | extracellular | 36.78 | 41.56 |
| CDY16331 | Canola | extracellular | 36.78 | 41.56 |
| CDY02283 | Canola | extracellular | 35.63 | 38.75 |
Protein Annotations
| EnsemblPlants:CDX83792 | EnsemblPlantsGene:GSBRNA2T00139541001 | PANTHER:PTHR36788 | PFAM:PD629468 | ProteinID:CDX83792 | ProteinID:CDX83792.1 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EDE677 | MapMan:35.2 | : | : |
Description
BnaC08g18530D
Coordinates
chrLK031834:-:482470..483371
Molecular Weight (calculated)
9567.8 Da
IEP (calculated)
8.759
GRAVY (calculated)
0.129
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKATSSLVV PIIFLVMFLS VSQNMGGRTC VAVIGMNCVN CRIKCYNNYG NLATAYCDRS GGSPEYYRCQ CTFPCGPPKH LNQNKVF
1: MAKATSSLVV PIIFLVIFAL VEQNMGCNDY IVGDVCVHCR ERCLRYYPVT RKAECYRNHC LCIGPCPDDR PHKRFQMLNS SKNVKAQILS
Arabidopsis Description
LCR64Defensin-like protein 178 [Source:UniProtKB/Swiss-Prot;Acc:P82778]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.