Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16331 | Canola | extracellular | 96.1 | 96.1 |
| CDX91173 | Canola | extracellular | 45.45 | 47.3 |
| CDY39762 | Canola | extracellular | 46.75 | 45.57 |
| CDY43552 | Canola | extracellular | 45.45 | 44.87 |
| CDX89668 | Canola | extracellular | 37.66 | 42.03 |
| CDY69877 | Canola | extracellular | 37.66 | 42.03 |
| CDX80652 | Canola | extracellular | 40.26 | 41.33 |
| CDY69362 | Canola | extracellular | 38.96 | 38.46 |
| CDX89666 | Canola | extracellular | 36.36 | 38.36 |
| CDY70383 | Canola | extracellular | 35.06 | 36.99 |
| CDX83792 | Canola | extracellular | 41.56 | 36.78 |
| CDX96684 | Canola | extracellular | 41.56 | 36.78 |
| CDY02283 | Canola | extracellular | 37.66 | 36.25 |
| CDX83795 | Canola | extracellular | 40.26 | 35.63 |
Protein Annotations
| EnsemblPlants:CDX91571 | EnsemblPlantsGene:GSBRNA2T00152971001 | GO:A0A078DQM0 | PANTHER:PTHR36788 | PFAM:PD629468 | ProteinID:CDX91571 |
| ProteinID:CDX91571.1 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EE84E4 | MapMan:35.2 | : |
Description
BnaC02g15890D
Coordinates
chrLK031868:-:527673..528350
Molecular Weight (calculated)
8392.5 Da
IEP (calculated)
8.135
GRAVY (calculated)
0.282
Length
77 amino acids
Sequence
(BLAST)
(BLAST)
1: MARAAFSLVL PIIFIVMFCL VDENMGCGQY IGPCPVRGTC DQACKAQFGP KADGICDFTG TKRCACKYPC MTDKTRI
1: MAKTASSLVL PIIFLVMFAL VEQNMGCMAV LGSCGVITDC SGECISRFGP QARGYCDRDG GSGTCVCVYP CPADKPHM
Arabidopsis Description
LCR61Defensin-like protein 171 [Source:UniProtKB/Swiss-Prot;Acc:P82775]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.