Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83792 | Canola | extracellular | 94.25 | 94.25 |
| CDX96684 | Canola | extracellular | 93.1 | 93.1 |
| CDX89666 | Canola | extracellular | 41.38 | 49.32 |
| CDY70383 | Canola | extracellular | 40.23 | 47.95 |
| CDX89668 | Canola | extracellular | 37.93 | 47.83 |
| AT2G29045.1 | Thale cress | extracellular | 42.53 | 47.44 |
| AT4G30064.1 | Thale cress | extracellular | 42.53 | 47.44 |
| CDY69877 | Canola | extracellular | 36.78 | 46.38 |
| CDX91173 | Canola | extracellular | 37.93 | 44.59 |
| CDX80652 | Canola | extracellular | 37.93 | 44.0 |
| CDY39762 | Canola | extracellular | 39.08 | 43.04 |
| CDY43552 | Canola | extracellular | 37.93 | 42.31 |
| CDY69362 | Canola | extracellular | 36.78 | 41.03 |
| CDX91571 | Canola | extracellular | 35.63 | 40.26 |
| CDY16331 | Canola | extracellular | 35.63 | 40.26 |
| CDY02283 | Canola | extracellular | 34.48 | 37.5 |
Protein Annotations
| EnsemblPlants:CDX83795 | EnsemblPlantsGene:GSBRNA2T00139544001 | PANTHER:PTHR36788 | PFAM:PD629468 | ProteinID:CDX83795 | ProteinID:CDX83795.1 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EB1E9E | MapMan:35.2 | : | : |
Description
BnaC08g18500D
Coordinates
chrLK031834:-:491962..492879
Molecular Weight (calculated)
9479.7 Da
IEP (calculated)
8.948
GRAVY (calculated)
0.129
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKATSSLVV PIIFLVMFLS ASQNMGGRSC VAVIGVNCVN CKIKCYNNYG NLATAYCDRS GGSPEYYRCQ CTFPCGPPKH LNQKKVF
1: MAKATSSLVV PIIFLVIFAL VEQNMGCNDY IVGDVCVHCR ERCLRYYPVT RKAECYRNHC LCIGPCPDDR PHKRFQMLNS SKNVKAQILS
Arabidopsis Description
LCR64Defensin-like protein 178 [Source:UniProtKB/Swiss-Prot;Acc:P82778]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.