Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G30067.1 | Thale cress | extracellular | 58.97 | 58.97 |
| CDX91173 | Canola | extracellular | 46.15 | 48.65 |
| CDY39762 | Canola | extracellular | 46.15 | 45.57 |
| CDX91571 | Canola | extracellular | 44.87 | 45.45 |
| CDY16331 | Canola | extracellular | 44.87 | 45.45 |
| CDX89668 | Canola | extracellular | 38.46 | 43.48 |
| CDY69877 | Canola | extracellular | 38.46 | 43.48 |
| CDX89666 | Canola | extracellular | 39.74 | 42.47 |
| CDX80652 | Canola | extracellular | 39.74 | 41.33 |
| CDY70383 | Canola | extracellular | 38.46 | 41.1 |
| CDX83792 | Canola | extracellular | 43.59 | 39.08 |
| CDX96684 | Canola | extracellular | 43.59 | 39.08 |
| CDY69362 | Canola | extracellular | 38.46 | 38.46 |
| CDX83795 | Canola | extracellular | 42.31 | 37.93 |
| CDY02283 | Canola | extracellular | 34.62 | 33.75 |
Protein Annotations
| EnsemblPlants:CDY43552 | EnsemblPlantsGene:GSBRNA2T00076843001 | PANTHER:PTHR36788 | PFAM:PD629468 | PFscan:PS51257 | ProteinID:CDY43552 |
| ProteinID:CDY43552.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EEF32F | UniProt:A0A078I0E2 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA01g06920DDefensin-like protein 173 [Source:Projected from Arabidopsis thaliana (AT4G30067) UniProtKB/Swiss-Prot;Acc:P82777]
Coordinates
chrLK032560:+:238270..238914
Molecular Weight (calculated)
8543.7 Da
IEP (calculated)
7.955
GRAVY (calculated)
0.687
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKAASLFVF PVMFFVMLSL VEYNMGCMAV IGSCRYIPDC GASCRVRFGI KALGYCDRDG AYGTCICTYP CLSDKINI
1: MAKAASTLVF PIIFLVMFAL IEQNMGCMAV LGSCGVITDC SGSCKTKFGQ DASGDCDRDG GQGTCMCGYP CPHDKLHM
Arabidopsis Description
LCR62Putative defensin-like protein 170 [Source:UniProtKB/Swiss-Prot;Acc:P82776]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.