Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009961.1-P | Field mustard | extracellular | 97.33 | 97.33 |
| CDY69362 | Canola | extracellular | 96.0 | 92.31 |
| AT4G30064.1 | Thale cress | extracellular | 46.67 | 44.87 |
| CDY39762 | Canola | extracellular | 45.33 | 43.04 |
| AT2G29045.1 | Thale cress | extracellular | 44.0 | 42.31 |
| CDY69877 | Canola | extracellular | 38.67 | 42.03 |
| CDX89668 | Canola | extracellular | 38.67 | 42.03 |
| CDY16331 | Canola | extracellular | 42.67 | 41.56 |
| CDX91173 | Canola | extracellular | 40.0 | 40.54 |
| CDX91571 | Canola | extracellular | 41.33 | 40.26 |
| CDY43552 | Canola | extracellular | 41.33 | 39.74 |
| CDX89666 | Canola | extracellular | 38.67 | 39.73 |
| CDY70383 | Canola | extracellular | 38.67 | 39.73 |
| CDX83792 | Canola | extracellular | 45.33 | 39.08 |
| CDX96684 | Canola | extracellular | 44.0 | 37.93 |
| CDX83795 | Canola | extracellular | 44.0 | 37.93 |
| CDY02283 | Canola | extracellular | 34.67 | 32.5 |
Protein Annotations
| EnsemblPlants:CDX80652 | EnsemblPlantsGene:GSBRNA2T00133792001 | PFAM:PD629468 | ProteinID:CDX80652 | ProteinID:CDX80652.1 | SignalP:SignalP-noTM |
| UniParc:UPI0004EAC3D0 | MapMan:35.2 | : | : | : | : |
Description
BnaC07g27920D
Coordinates
chrLK031821:-:1859105..1859853
Molecular Weight (calculated)
7904.6 Da
IEP (calculated)
4.080
GRAVY (calculated)
0.428
Length
75 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKSTSSLVV AIIYLMMFSL VEENMGCEVD YGSCKDIGNC EVMCMVKFGS AATGYCAGGS ETGRCYCDFP GPCIG
1: MAKASSTLVL SIIFLVMFAL VEQNMGCTAT MGPCEKDKSC SATCRATFGD RANGFCDYST STSPGGECTC VYHCPPVVPH ESHL
Arabidopsis Description
LCR60Defensin-like protein 172 [Source:UniProtKB/Swiss-Prot;Acc:P82774]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.