Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G29045.1 | Thale cress | extracellular | 78.21 | 78.21 |
| AT4G30067.1 | Thale cress | extracellular | 57.69 | 57.69 |
| CDX91173 | Canola | extracellular | 48.72 | 51.35 |
| AT2G20208.1 | Thale cress | extracellular | 55.13 | 51.19 |
| CDX89668 | Canola | extracellular | 44.87 | 50.72 |
| CDY69877 | Canola | extracellular | 44.87 | 50.72 |
| CDY70383 | Canola | extracellular | 44.87 | 47.95 |
| Bra009961.1-P | Field mustard | extracellular | 44.87 | 46.67 |
| CDX80652 | Canola | extracellular | 44.87 | 46.67 |
| CDX89666 | Canola | extracellular | 43.59 | 46.58 |
| CDX83792 | Canola | extracellular | 48.72 | 43.68 |
| CDX96684 | Canola | extracellular | 48.72 | 43.68 |
| CDY69362 | Canola | extracellular | 43.59 | 43.59 |
| CDX83795 | Canola | extracellular | 47.44 | 42.53 |
| Bra013101.1-P | Field mustard | extracellular | 43.59 | 42.5 |
| CDY02283 | Canola | extracellular | 41.03 | 40.0 |
Protein Annotations
| MapMan:35.1 | EntrezGene:3770558 | ProteinID:AEE85714.1 | EMBL:AL078464 | EMBL:AL161576 | ArrayExpress:AT4G30064 |
| EnsemblPlantsGene:AT4G30064 | RefSeq:AT4G30064 | TAIR:AT4G30064 | RefSeq:AT4G30064-TAIR-G | EnsemblPlants:AT4G30064.1 | TAIR:AT4G30064.1 |
| EMBL:AY803268 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0031640 | GO:GO:0050832 | Symbol:LCR61 | RefSeq:NP_001031753.1 |
| UniProt:P82775 | PFAM:PD629468 | PFscan:PS51257 | PANTHER:PTHR36788 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI000034E61F | : | : | : | : | : |
Description
LCR61Defensin-like protein 171 [Source:UniProtKB/Swiss-Prot;Acc:P82775]
Coordinates
chr4:+:14694239..14694778
Molecular Weight (calculated)
8182.1 Da
IEP (calculated)
5.645
GRAVY (calculated)
0.487
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKTASSLVL PIIFLVMFAL VEQNMGCMAV LGSCGVITDC SGECISRFGP QARGYCDRDG GSGTCVCVYP CPADKPHM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.