Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69877 | Canola | extracellular | 95.65 | 95.65 |
| CDY70383 | Canola | extracellular | 84.06 | 79.45 |
| CDX89666 | Canola | extracellular | 82.61 | 78.08 |
| CDY02283 | Canola | extracellular | 75.36 | 65.0 |
| CDY39762 | Canola | extracellular | 55.07 | 48.1 |
| AT4G30064.1 | Thale cress | extracellular | 50.72 | 44.87 |
| AT2G29045.1 | Thale cress | extracellular | 49.28 | 43.59 |
| CDX91173 | Canola | extracellular | 44.93 | 41.89 |
| CDX83792 | Canola | extracellular | 49.28 | 39.08 |
| CDX96684 | Canola | extracellular | 49.28 | 39.08 |
| CDX80652 | Canola | extracellular | 42.03 | 38.67 |
| CDY43552 | Canola | extracellular | 43.48 | 38.46 |
| CDX83795 | Canola | extracellular | 47.83 | 37.93 |
| CDX91571 | Canola | extracellular | 42.03 | 37.66 |
| CDY16331 | Canola | extracellular | 40.58 | 36.36 |
| CDY69362 | Canola | extracellular | 40.58 | 35.9 |
Protein Annotations
| EnsemblPlants:CDX89668 | EnsemblPlantsGene:GSBRNA2T00150063001 | PFAM:PD629468 | ProteinID:CDX89668 | ProteinID:CDX89668.1 | SignalP:SignalP-noTM |
| UniParc:UPI0004EAFC23 | MapMan:35.2 | : | : | : | : |
Description
BnaC03g45820D
Coordinates
chrLK031860:+:664411..665435
Molecular Weight (calculated)
7531.4 Da
IEP (calculated)
7.663
GRAVY (calculated)
0.536
Length
69 amino acids
Sequence
(BLAST)
(BLAST)
1: MSNAKFSVVF PIIFLIMFAL VEDNMGCQAS LGDCRICGIK CSYYGRHAEA HCIGGICVCD FPCKPPPKL
1: MAKAASTLVF PIIFLVMFAL IEQNMGCMAV LGSCGVITDC SGSCKTKFGQ DASGDCDRDG GQGTCMCGYP CPHDKLHM
Arabidopsis Description
LCR62Putative defensin-like protein 170 [Source:UniProtKB/Swiss-Prot;Acc:P82776]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.