Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G30064.1 | Thale cress | extracellular | 78.21 | 78.21 |
| AT4G30067.1 | Thale cress | extracellular | 58.97 | 58.97 |
| CDX91173 | Canola | extracellular | 47.44 | 50.0 |
| CDX89668 | Canola | extracellular | 43.59 | 49.28 |
| CDY69877 | Canola | extracellular | 43.59 | 49.28 |
| AT2G20208.1 | Thale cress | extracellular | 52.56 | 48.81 |
| CDX89666 | Canola | extracellular | 44.87 | 47.95 |
| CDY70383 | Canola | extracellular | 44.87 | 47.95 |
| Bra009961.1-P | Field mustard | extracellular | 42.31 | 44.0 |
| CDX80652 | Canola | extracellular | 42.31 | 44.0 |
| CDX83792 | Canola | extracellular | 47.44 | 42.53 |
| CDX83795 | Canola | extracellular | 47.44 | 42.53 |
| CDX96684 | Canola | extracellular | 47.44 | 42.53 |
| CDY69362 | Canola | extracellular | 41.03 | 41.03 |
| Bra013101.1-P | Field mustard | extracellular | 41.03 | 40.0 |
| CDY02283 | Canola | extracellular | 38.46 | 37.5 |
Protein Annotations
| MapMan:35.1 | EntrezGene:3767774 | UniProt:A0A178VT22 | EMBL:AC005315 | ProteinID:AEC08201.1 | ArrayExpress:AT2G29045 |
| EnsemblPlantsGene:AT2G29045 | RefSeq:AT2G29045 | TAIR:AT2G29045 | RefSeq:AT2G29045-TAIR-G | EnsemblPlants:AT2G29045.1 | TAIR:AT2G29045.1 |
| Unigene:At.64378 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0031640 | GO:GO:0050832 | Symbol:LCR62 | RefSeq:NP_001031441.1 |
| ProteinID:OAP08305.1 | UniProt:P82776 | PFAM:PD629468 | PFscan:PS51257 | PANTHER:PTHR36788 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI00005DC014 | : | : | : | : |
Description
LCR62Putative defensin-like protein 170 [Source:UniProtKB/Swiss-Prot;Acc:P82776]
Coordinates
chr2:+:12476372..12477107
Molecular Weight (calculated)
8187.1 Da
IEP (calculated)
5.508
GRAVY (calculated)
0.324
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKAASTLVF PIIFLVMFAL IEQNMGCMAV LGSCGVITDC SGSCKTKFGQ DASGDCDRDG GQGTCMCGYP CPHDKLHM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.