Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G30064.1 | Thale cress | extracellular | 51.35 | 48.72 |
| AT2G29045.1 | Thale cress | extracellular | 50.0 | 47.44 |
| CDY43552 | Canola | extracellular | 48.65 | 46.15 |
| CDX91571 | Canola | extracellular | 47.3 | 45.45 |
| CDY16331 | Canola | extracellular | 47.3 | 45.45 |
| CDX89668 | Canola | extracellular | 41.89 | 44.93 |
| CDX89666 | Canola | extracellular | 43.24 | 43.84 |
| CDY69877 | Canola | extracellular | 40.54 | 43.48 |
| CDY70383 | Canola | extracellular | 41.89 | 42.47 |
| CDY39762 | Canola | extracellular | 44.59 | 41.77 |
| CDX96684 | Canola | extracellular | 48.65 | 41.38 |
| CDX83792 | Canola | extracellular | 47.3 | 40.23 |
| CDX80652 | Canola | extracellular | 40.54 | 40.0 |
| CDX83795 | Canola | extracellular | 44.59 | 37.93 |
| CDY69362 | Canola | extracellular | 39.19 | 37.18 |
| CDY02283 | Canola | extracellular | 39.19 | 36.25 |
Protein Annotations
| EnsemblPlants:CDX91173 | EnsemblPlantsGene:GSBRNA2T00151976001 | PANTHER:PTHR36788 | PFAM:PD629468 | ProteinID:CDX91173 | ProteinID:CDX91173.1 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EEB214 | MapMan:35.2 | : | : |
Description
BnaC02g04240D
Coordinates
chrLK031865:+:1220939..1221697
Molecular Weight (calculated)
8153.1 Da
IEP (calculated)
8.219
GRAVY (calculated)
0.269
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKAASSLVF PIIFLVMLGL VEQSMNCEAT FWACGDHCRS KCRATFGPKT TAHCLKQTNQ CICTFPCPVD KTHI
1: MAKTASSLVL PIIFLVMFAL VEQNMGCMAV LGSCGVITDC SGECISRFGP QARGYCDRDG GSGTCVCVYP CPADKPHM
Arabidopsis Description
LCR61Defensin-like protein 171 [Source:UniProtKB/Swiss-Prot;Acc:P82775]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.