Factsheet for Bra036691.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
golgi 5
plasma membrane 5
endoplasmic reticulum 6
vacuole 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39762	Canola	extracellular	60.75	82.28
AT2G20208.1	Thale cress	extracellular	42.99	54.76
Bra009961.1-P	Field mustard	extracellular	28.97	41.33
Bra013101.1-P	Field mustard	extracellular	26.17	35.0

Protein Annotations

EnsemblPlants:Bra036691.1	EnsemblPlants:Bra036691.1-P	EnsemblPlantsGene:Bra036691	PANTHER:PTHR36788	PFAM:PD629468	SEG:seg
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002542047	UniProt:M4F6I1	MapMan:35.1	:

Description

AT2G20208 (E=6e-021) LCR60 | LCR60 (Low-molecular-weight cysteine-rich 60)

Coordinates

chrA09:+:5612892..5614196

Molecular Weight (calculated)

10859.2 Da

IEP (calculated)

3.543

GRAVY (calculated)

-0.340

Length

107 amino acids

Sequence
(BLAST)

001: MAKTTSTLVL PIIFLIMFAL VEQNVGCTAS MGPCEIGKSC TTKCKVTFGQ MANGYCDRST GGLGESFGDD DSSSGDDDSS SGDDDSSSGD DDSSSNDDDS
101: SSGGVPI

Best Arabidopsis Sequence Match ( AT2G20208.1 )
(BLAST)

1: MAKASSTLVL SIIFLVMFAL VEQNMGCTAT MGPCEKDKSC SATCRATFGD RANGFCDYST STSPGGECTC VYHCPPVVPH ESHL

Arabidopsis Description

LCR60Defensin-like protein 172 [Source:UniProtKB/Swiss-Prot;Acc:P82774]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.