Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47980.1 | CDX89318 | AT4G26630.1 | 25387881 |
| AT2G47980.1 | CDX94304 | AT4G26630.1 | 25387881 |
| AT2G47980.1 | CDX97358 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70560 | Canola | cytosol | 58.65 | 95.02 |
| AT2G47980.1 | Thale cress | nucleus | 83.83 | 74.59 |
| PGSC0003DMT400041085 | Potato | nucleus | 56.4 | 59.96 |
| Zm00001d007679_P001 | Maize | cytosol | 32.45 | 57.43 |
| VIT_07s0104g01070.t01 | Wine grape | nucleus | 64.59 | 55.16 |
| KRH68087 | Soybean | nucleus | 61.11 | 53.02 |
| GSMUA_Achr7P03650_001 | Banana | nucleus, plastid | 59.37 | 52.54 |
| CDY71521 | Canola | cytosol, nucleus, plasma membrane | 12.49 | 50.83 |
| Solyc05g026510.2.1 | Tomato | nucleus | 59.57 | 50.39 |
| PGSC0003DMT400050328 | Potato | cytosol | 8.8 | 48.86 |
| Os05t0188500-02 | Rice | nucleus | 55.48 | 48.57 |
| OQU83929 | Sorghum | nucleus | 55.78 | 47.89 |
| CDY72413 | Canola | cytosol, nucleus, plasma membrane | 12.49 | 47.29 |
| HORVU4Hr1G031480.1 | Barley | nucleus | 54.25 | 47.28 |
| TraesCSU01G181400.2 | Wheat | nucleus | 54.25 | 47.28 |
| TraesCS4A01G158700.1 | Wheat | nucleus | 54.25 | 47.2 |
| TraesCS4D01G147700.3 | Wheat | nucleus | 54.45 | 46.75 |
| PGSC0003DMT400050326 | Potato | plastid | 5.02 | 40.83 |
| PGSC0003DMT400017123 | Potato | cytosol | 8.7 | 40.28 |
| Zm00001d007677_P001 | Maize | cytosol | 23.64 | 36.73 |
| PGSC0003DMT400041086 | Potato | nucleus | 3.79 | 17.54 |
| CDX80144 | Canola | mitochondrion | 7.47 | 16.63 |
Protein Annotations
| EnsemblPlants:CDX80145 | EnsemblPlantsGene:GSBRNA2T00133053001 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | InterPro:IPR020839 |
| InterPro:SCD | InterPro:STAG | PANTHER:PTHR11199 | PANTHER:PTHR11199:SF0 | PFAM:PF08514 | PFscan:PS51425 |
| ProteinID:CDX80145 | ProteinID:CDX80145.1 | SEG:seg | SUPFAM:SSF48371 | UniParc:UPI0004EE12D1 | MapMan:13.3.5.1.5 |
Description
BnaA05g00110D
Coordinates
chrLK031819:+:2079473..2084312
Molecular Weight (calculated)
111814.0 Da
IEP (calculated)
5.426
GRAVY (calculated)
-0.310
Length
977 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGAKRTRDQ DQDDDNSGGG ENQNQKQERS TSQDQKSPEL DDDDFQETRP QSKRSRTLPS HQNLIEVVKG KVDLIPKTVK IWVERYENSP NLATSELLSM
101: LFQACGAKYS IKEDLLDETD VDDVVVALVN LARSGEIEDY HTSRKKEHKN FKENLVSFWN CLITDSQNGP LFDKLLFDKC MDFIIALSCT PPRVYRHTAT
201: LMGLQLVTSF ISVANTLGSH RETTQRQLNA ETKKRPDGPL LHSLNKRLSL SHQHITTLED MMRKIFTGLF VHRYRDVDPD IRMSCIQSLG IWISSYPSLF
301: LQDLYLKYLG WTLNDKAAGV RKASLLALRK LYEMDENVPT LGLFTERFSN RMIEMADDVD LSAAVCAIGL VKQLLRHQLI PDDDLGPLYD LLIDQPQEIR
401: RAIGELVYDH LIAQKFNSSP SGLTGHDDSS SEIHIFRMLQ ILREFSTDPI LSVYVIDDVW EYMKAMKDWK CIISMLLDQN PRTGSTTDED TTNLVRLLFA
501: SIRKAVGEKI IPSTDNRKQY HSKAQREMFE NNRKDITVAM MKNYPQLLRK FMADKAKVSS LVEIVMFMKL ELYSLKRQEQ SFKAAVRLIK DAFFMNGEKE
601: ALRSCVKAIT FCASESKGEL QDFSRGKLKD LEDTLFDKLT SAIKEVKDGN DEYSLLVNLK RLYELQLLKP VLGESMYDEL AMTLHDFRNL DEEVICFLLL
701: NMHMYVVWSL HSVVNCETVS EASLSSLISK RDILFAELTY FLNGVEESRK YGNQLALRIC ALLAEEWCLF RKSTFESSKL EMLGYCPESV ILKKFWKLCE
801: EIFNTSDETD EEDENKEYVA ETNRDVAAIA ACKLVNCGVV PKDYLGPEII SHLVMHGPSV TEVIKNLITC LRKTEDDISS IYMESLKRGY QRYESELSCD
901: GGESRVEKCL QVCRELAGRL SGMYVGAARN KHRLEILSVV KEGVEFAFRD APKQMLFLEV AILPFATRLS VPDIIDM
101: LFQACGAKYS IKEDLLDETD VDDVVVALVN LARSGEIEDY HTSRKKEHKN FKENLVSFWN CLITDSQNGP LFDKLLFDKC MDFIIALSCT PPRVYRHTAT
201: LMGLQLVTSF ISVANTLGSH RETTQRQLNA ETKKRPDGPL LHSLNKRLSL SHQHITTLED MMRKIFTGLF VHRYRDVDPD IRMSCIQSLG IWISSYPSLF
301: LQDLYLKYLG WTLNDKAAGV RKASLLALRK LYEMDENVPT LGLFTERFSN RMIEMADDVD LSAAVCAIGL VKQLLRHQLI PDDDLGPLYD LLIDQPQEIR
401: RAIGELVYDH LIAQKFNSSP SGLTGHDDSS SEIHIFRMLQ ILREFSTDPI LSVYVIDDVW EYMKAMKDWK CIISMLLDQN PRTGSTTDED TTNLVRLLFA
501: SIRKAVGEKI IPSTDNRKQY HSKAQREMFE NNRKDITVAM MKNYPQLLRK FMADKAKVSS LVEIVMFMKL ELYSLKRQEQ SFKAAVRLIK DAFFMNGEKE
601: ALRSCVKAIT FCASESKGEL QDFSRGKLKD LEDTLFDKLT SAIKEVKDGN DEYSLLVNLK RLYELQLLKP VLGESMYDEL AMTLHDFRNL DEEVICFLLL
701: NMHMYVVWSL HSVVNCETVS EASLSSLISK RDILFAELTY FLNGVEESRK YGNQLALRIC ALLAEEWCLF RKSTFESSKL EMLGYCPESV ILKKFWKLCE
801: EIFNTSDETD EEDENKEYVA ETNRDVAAIA ACKLVNCGVV PKDYLGPEII SHLVMHGPSV TEVIKNLITC LRKTEDDISS IYMESLKRGY QRYESELSCD
901: GGESRVEKCL QVCRELAGRL SGMYVGAARN KHRLEILSVV KEGVEFAFRD APKQMLFLEV AILPFATRLS VPDIIDM
0001: MEDSPQGLKR SRDPDQDQDD DSGEAGKADG SGGENQERSS DQIELDDDDF QETRPKPKRS RTHPPQQNLI EVVKGNGDLI SKAVKIWVER YEDSPSLATT
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
Arabidopsis Description
SCC3SCC3 [Source:UniProtKB/TrEMBL;Acc:A0A178VN21]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.