Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_19s0015g00430.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47980.1 | VIT_19s0015g00430.t01 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH68087 | Soybean | nucleus | 71.07 | 72.2 |
| CDY70560 | Canola | cytosol | 36.71 | 69.65 |
| PGSC0003DMT400041085 | Potato | nucleus | 54.63 | 68.01 |
| GSMUA_Achr7P03650_001 | Banana | nucleus, plastid | 64.25 | 66.58 |
| AT2G47980.1 | Thale cress | nucleus | 62.24 | 64.85 |
| CDX80145 | Canola | cytosol, nucleus, plastid | 55.16 | 64.59 |
| Solyc05g026510.2.1 | Tomato | nucleus | 64.77 | 64.16 |
| Zm00001d007679_P001 | Maize | cytosol | 29.63 | 61.41 |
| Os05t0188500-02 | Rice | nucleus | 58.04 | 59.5 |
| PGSC0003DMT400041086 | Potato | nucleus | 10.84 | 58.77 |
| HORVU4Hr1G031480.1 | Barley | nucleus | 57.52 | 58.7 |
| TraesCS4A01G158700.1 | Wheat | nucleus | 57.43 | 58.5 |
| TraesCSU01G181400.2 | Wheat | nucleus | 57.26 | 58.43 |
| OQU83929 | Sorghum | nucleus | 57.78 | 58.08 |
| TraesCS4D01G147700.3 | Wheat | nucleus | 57.34 | 57.65 |
| PGSC0003DMT400050328 | Potato | cytosol | 8.13 | 52.84 |
| Zm00001d007677_P001 | Maize | cytosol | 28.85 | 52.46 |
| PGSC0003DMT400050326 | Potato | plastid | 5.07 | 48.33 |
| CDY71521 | Canola | cytosol, nucleus, plasma membrane | 10.05 | 47.92 |
| CDY72413 | Canola | cytosol, nucleus, plasma membrane | 10.31 | 45.74 |
| Bra004420.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 60.31 | 45.31 |
| PGSC0003DMT400017123 | Potato | cytosol | 7.69 | 41.71 |
Protein Annotations
| EntrezGene:100242474 | wikigene:100242474 | MapMan:13.3.5.1.5 | InterPro:ARM-type_fold | ProteinID:CBI32283 | ProteinID:CBI32283.3 |
| ncoils:Coil | UniProt:D7TP60 | EMBL:FN596005 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051455 | GO:GO:0051754 | InterPro:IPR020839 |
| EntrezGene:LOC100242474 | wikigene:LOC100242474 | PFAM:PF08514 | PFscan:PS51425 | PANTHER:PTHR11199 | PANTHER:PTHR11199:SF0 |
| InterPro:SCD | SUPFAM:SSF48371 | InterPro:STAG | UniParc:UPI0001BE3F6F | ArrayExpress:VIT_07s0104g01070 | EnsemblPlantsGene:VIT_07s0104g01070 |
| EnsemblPlants:VIT_07s0104g01070.t01 | unigene:Vvi.22502 | RefSeq:XP_002270509 | RefSeq:XP_002270509.2 | SEG:seg | : |
Description
No Description!
Coordinates
chr7:-:2157089..2168943
Molecular Weight (calculated)
130389.0 Da
IEP (calculated)
5.384
GRAVY (calculated)
-0.432
Length
1144 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEDAAQPSEI TTRRSKRARV PAKTKFGENQ SQDRTSEPSD QSPSEADREG SVDEFVEPRA RAKRNRTEGS STAAKKFDQS LIEVIKGNGK LIPQVVKLWV
0101: EQYEKDPKPA MVELLMMLFE ACGAKYHLRE ELLDETDVDD VVVALVNLAR RGEAEDYQSS KKKEFKNFKD NLVSFWDNLV IECQNGPLFD QVLFDKCVDY
0201: IIALSCTPPR VYRQVASLMG LQLVTSFITV AKMLGAQRET TQRQLNAEKK KRTEGPRVES LNKRLSTTHE KITVIEEMMR KIFTGLFVHR YRDIDQDIRM
0301: SCIQSLGVWI ISYPSLFLQD LYLKYLGWTL NDKSAGVRKA SILALQNLYD VDDNVPSLGL FTERFSNRMI ELADDIDVSV AVCAIGLVKQ LLRHQLLADD
0401: DLGPLYDLLI DDSTEIRHAI GALVYDHLIA QKFNSSQSHA KGDDGDSSEV HLGRMLQILR EFSADPILSI YVIDDVWEYM NAMKDWKCII SMLLDENPLI
0501: ELTDEDATNL IRLLCASVKK AVGERIVPAT DNRKQYYNKA QKEIFEHNRR DITVAMMKNY SQLLRKFMAD KAKVPSLIEI ILHMNLELYS LKRQEQNFKT
0601: LLQLMREAFF KHGEKDALRS CVKAINFCSS ECQGELKDFA QNKLKELEDE LIAKLKTAIK EVADGDDEYS LLVNLKRLYE LQLSRSVPIE SLYEDMVMIL
0701: KSSKSMDDEV VSFLLHNMSL HVAWCLHAII NSDTVSEESL SSLLSKRTTL FEQLEHFLYA HTEVQEEGKR ANQPACRVCI ILAQVWCLFK KTKFSSTKLE
0801: SLGYCPDSSV LQKFWKLCEQ QLNISDETEE DDVNQEYVEE TNRDAVMIAA AMLVATDVVP KEYLGPEIIS HFVMHGTSIA EIVKNLIAVL KKKDDDVPNI
0901: FLEALRRAYH RHLVELSRSD DTSLASKSVK DCKDLAARLS TTFMGAARNK HRLDILRIVK DGIDYAFVDA PKQLSFLEIA VLHFVSRLPT SDVLEILKDV
1001: QKRTENVNTD EDPSGWRPYY TFIDSLREKY SKNDGFQDEK EGTSVRRRGR PRKRRNIQGK KLFDDHSSSE EDSISASDED ARDDEERQGE EEEEEAPLIQ
1101: SIRSSAKLRS LRVSREENKG PTNPGDSGRA TDAIAASRTS GASS
0101: EQYEKDPKPA MVELLMMLFE ACGAKYHLRE ELLDETDVDD VVVALVNLAR RGEAEDYQSS KKKEFKNFKD NLVSFWDNLV IECQNGPLFD QVLFDKCVDY
0201: IIALSCTPPR VYRQVASLMG LQLVTSFITV AKMLGAQRET TQRQLNAEKK KRTEGPRVES LNKRLSTTHE KITVIEEMMR KIFTGLFVHR YRDIDQDIRM
0301: SCIQSLGVWI ISYPSLFLQD LYLKYLGWTL NDKSAGVRKA SILALQNLYD VDDNVPSLGL FTERFSNRMI ELADDIDVSV AVCAIGLVKQ LLRHQLLADD
0401: DLGPLYDLLI DDSTEIRHAI GALVYDHLIA QKFNSSQSHA KGDDGDSSEV HLGRMLQILR EFSADPILSI YVIDDVWEYM NAMKDWKCII SMLLDENPLI
0501: ELTDEDATNL IRLLCASVKK AVGERIVPAT DNRKQYYNKA QKEIFEHNRR DITVAMMKNY SQLLRKFMAD KAKVPSLIEI ILHMNLELYS LKRQEQNFKT
0601: LLQLMREAFF KHGEKDALRS CVKAINFCSS ECQGELKDFA QNKLKELEDE LIAKLKTAIK EVADGDDEYS LLVNLKRLYE LQLSRSVPIE SLYEDMVMIL
0701: KSSKSMDDEV VSFLLHNMSL HVAWCLHAII NSDTVSEESL SSLLSKRTTL FEQLEHFLYA HTEVQEEGKR ANQPACRVCI ILAQVWCLFK KTKFSSTKLE
0801: SLGYCPDSSV LQKFWKLCEQ QLNISDETEE DDVNQEYVEE TNRDAVMIAA AMLVATDVVP KEYLGPEIIS HFVMHGTSIA EIVKNLIAVL KKKDDDVPNI
0901: FLEALRRAYH RHLVELSRSD DTSLASKSVK DCKDLAARLS TTFMGAARNK HRLDILRIVK DGIDYAFVDA PKQLSFLEIA VLHFVSRLPT SDVLEILKDV
1001: QKRTENVNTD EDPSGWRPYY TFIDSLREKY SKNDGFQDEK EGTSVRRRGR PRKRRNIQGK KLFDDHSSSE EDSISASDED ARDDEERQGE EEEEEAPLIQ
1101: SIRSSAKLRS LRVSREENKG PTNPGDSGRA TDAIAASRTS GASS
0001: MEDSPQGLKR SRDPDQDQDD DSGEAGKADG SGGENQERSS DQIELDDDDF QETRPKPKRS RTHPPQQNLI EVVKGNGDLI SKAVKIWVER YEDSPSLATT
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
Arabidopsis Description
SCC3SCC3 [Source:UniProtKB/TrEMBL;Acc:A0A178VN21]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.