Factsheet for Bra028736.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04985	Canola	cytosol	55.64	66.51
Bra009182.1-P	Field mustard	cytosol	54.86	65.58
AT5G06300.1	Thale cress	cytosol	55.25	65.44
KRH32819	Soybean	cytosol	47.86	57.48
VIT_08s0007g02480.t01	Wine grape	cytosol	48.25	57.41
KRH67989	Soybean	cytosol	47.47	57.28
KRG96247	Soybean	cytosol	47.47	57.28
KRH72214	Soybean	cytosol	47.47	57.01
Solyc10g082020.1.1	Tomato	cytosol	47.47	56.22
PGSC0003DMT400042349	Potato	cytosol	46.3	54.59
Bra023107.1-P	Field mustard	cytosol	43.58	54.37
Bra017202.1-P	Field mustard	cytosol	43.58	53.33
PGSC0003DMT400072345	Potato	cytosol	46.69	52.63
Bra034399.1-P	Field mustard	cytosol	43.19	52.11
Bra011962.1-P	Field mustard	cytosol	42.02	50.7
Bra017270.1-P	Field mustard	cytosol	41.63	50.23
Bra011592.1-P	Field mustard	cytosol	43.97	48.29
Bra020803.1-P	Field mustard	cytosol	42.8	48.25
Bra039788.1-P	Field mustard	cytosol	28.79	44.31
Bra003135.1-P	Field mustard	cytosol	28.79	44.31
Bra007000.1-P	Field mustard	cytosol	28.79	44.05
Bra023351.1-P	Field mustard	cytosol	36.58	43.32
Bra008924.1-P	Field mustard	cytosol	36.19	43.06
Bra036562.1-P	Field mustard	cytosol	29.57	39.58
Bra028735.1-P	Field mustard	cytosol	7.39	15.08
Solyc01g007270.1.1	Tomato	cytosol	3.5	12.86

Protein Annotations

MapMan:11.4.1.2	Gene3D:3.40.50.450	EnsemblPlantsGene:Bra028736	EnsemblPlants:Bra028736.1	EnsemblPlants:Bra028736.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009691
GO:GO:0009987	GO:GO:0016787	InterPro:LOG	InterPro:LOG_fam	UniProt:M4EIX1	PFAM:PF03641
PANTHER:PTHR31223	PANTHER:PTHR31223:SF20	SUPFAM:SSF102405	TIGRFAMs:TIGR00730	UniParc:UPI000254317D	SEG:seg

Description

AT5G06300 (E=6e-073) | carboxy-lyase

Coordinates

chrA02:-:2314997..2316839

Molecular Weight (calculated)

29785.6 Da

IEP (calculated)

9.224

GRAVY (calculated)

-0.598

Length

257 amino acids

Sequence
(BLAST)

001: MWKRKKKVDR DLAKVKGARA RVLYRRREVE LQTGESTKVE FVSVCRFIQA GLELGPVSRP ISYTYEEKLE QEREFVTEAN KLEKQNQRER DLSRRRSRRR
101: RWRAARDLTK GVSDYRWCIS EITGETIGEV KAVADMHQRK AEMARQADAF IALPGGYGTL EELLEVITWA QLGIHRKPVG LLNVDGYYNS LLTFIDKAVD
201: EGFISPMARR IIVSAPNAKE LVRQLEEYEP EFDEITSKLV WDEVDRLSYV PGSEVTT

Best Arabidopsis Sequence Match ( AT2G28305.1 )
(BLAST)

001: MEIESKFKRI CVFCGSSAGN KVSYKDAAIE LGTELVSRNI DLVYGGGSIG LMGLISQAVF NGGRHVIGVI PKTLMPREIT GETVGEVKAV ADMHQRKAEM
101: AKHSDAFIAL PGGYGTLEEL LEVITWAQLG IHDKPVGLLN VEGYYNSLLS FIDKAVEEGF ISPTARHIIV SAPSAKELVK KLEDYVPRHE KVASKKSWEM
201: EQIGLSPTCE ISR

Arabidopsis Description

LOG1Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178VS96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.