Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003135.1-P | Field mustard | cytosol | 96.43 | 97.01 |
| Bra039788.1-P | Field mustard | cytosol | 95.24 | 95.81 |
| TraesCS4D01G250300.1 | Wheat | mitochondrion | 30.36 | 75.0 |
| AT3G53450.1 | Thale cress | cytosol | 94.64 | 73.95 |
| TraesCS4A01G054500.1 | Wheat | mitochondrion | 29.76 | 73.53 |
| CDX73553 | Canola | cytosol | 84.52 | 72.08 |
| Bra017202.1-P | Field mustard | cytosol | 87.5 | 70.0 |
| CDX78180 | Canola | cytosol | 99.4 | 69.29 |
| Bra023107.1-P | Field mustard | cytosol | 83.93 | 68.45 |
| Solyc09g007830.2.1 | Tomato | cytosol | 84.52 | 65.14 |
| PGSC0003DMT400055525 | Potato | cytosol | 84.52 | 65.14 |
| PGSC0003DMT400027157 | Potato | cytosol | 84.52 | 64.55 |
| Solyc10g084150.1.1 | Tomato | cytosol | 83.33 | 63.64 |
| KRG95991 | Soybean | cytosol | 82.74 | 63.47 |
| KRH19875 | Soybean | cytosol | 82.74 | 63.47 |
| GSMUA_Achr6P36490_001 | Banana | cytosol | 81.55 | 63.13 |
| KRH67693 | Soybean | cytosol | 81.55 | 62.56 |
| VIT_08s0040g01780.t01 | Wine grape | cytosol | 80.95 | 62.39 |
| GSMUA_Achr1P09040_001 | Banana | cytosol | 80.36 | 61.93 |
| TraesCS1D01G154700.1 | Wheat | mitochondrion | 76.19 | 61.54 |
| TraesCS1B01G173200.1 | Wheat | mitochondrion | 76.19 | 61.54 |
| TraesCS1A01G156100.1 | Wheat | mitochondrion | 76.19 | 61.54 |
| Bra034399.1-P | Field mustard | cytosol | 77.98 | 61.5 |
| Zm00001d014016_P001 | Maize | mitochondrion, nucleus | 75.0 | 60.87 |
| Bra011962.1-P | Field mustard | cytosol | 76.79 | 60.56 |
| EER94070 | Sorghum | mitochondrion | 74.4 | 60.39 |
| TraesCS4D01G310800.1 | Wheat | mitochondrion | 70.24 | 57.56 |
| TraesCS4B01G250400.1 | Wheat | mitochondrion | 70.24 | 57.56 |
| TraesCS4A01G413200.1 | Wheat | mitochondrion | 70.24 | 57.28 |
| Bra009182.1-P | Field mustard | cytosol | 72.62 | 56.74 |
| TraesCS4B01G313800.1 | Wheat | mitochondrion | 69.05 | 56.59 |
| EES05457 | Sorghum | cytosol | 75.0 | 51.64 |
| Zm00001d003013_P001 | Maize | cytosol | 76.19 | 51.41 |
| TraesCS2A01G380600.1 | Wheat | cytosol | 74.4 | 50.81 |
| Zm00001d029127_P001 | Maize | mitochondrion | 67.86 | 50.22 |
| TraesCS2D01G376900.1 | Wheat | cytosol | 73.21 | 50.0 |
| Zm00001d025868_P002 | Maize | cytosol | 75.0 | 49.8 |
| Bra017270.1-P | Field mustard | cytosol | 63.1 | 49.77 |
| EES11120 | Sorghum | cytosol | 76.19 | 49.42 |
| HORVU2Hr1G089620.5 | Barley | cytosol | 76.19 | 48.67 |
| TraesCS1D01G003500.1 | Wheat | cytosol | 69.05 | 48.54 |
| Bra011592.1-P | Field mustard | cytosol | 65.48 | 47.01 |
| Bra008924.1-P | Field mustard | cytosol | 60.12 | 46.76 |
| Bra020803.1-P | Field mustard | cytosol | 63.1 | 46.49 |
| EER94862 | Sorghum | mitochondrion, plastid | 60.12 | 46.12 |
| Bra023351.1-P | Field mustard | cytosol | 59.52 | 46.08 |
| TraesCS2B01G397600.2 | Wheat | cytosol | 74.4 | 44.64 |
| Bra036562.1-P | Field mustard | cytosol | 45.83 | 40.1 |
| Bra028735.1-P | Field mustard | cytosol | 23.81 | 31.75 |
| TraesCS4D01G250200.1 | Wheat | mitochondrion | 20.83 | 30.97 |
| Bra028736.1-P | Field mustard | nucleus | 44.05 | 28.79 |
| HORVU4Hr1G079860.4 | Barley | cytosol, nucleus | 45.83 | 25.5 |
Protein Annotations
| EnsemblPlants:Bra007000.1 | EnsemblPlants:Bra007000.1-P | EnsemblPlantsGene:Bra007000 | Gene3D:3.40.50.450 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009691 | GO:GO:0009987 | GO:GO:0016787 |
| InterPro:LOG | InterPro:LOG_fam | PANTHER:PTHR31223 | PANTHER:PTHR31223:SF17 | PFAM:PF03641 | SUPFAM:SSF102405 |
| TIGRFAMs:TIGR00730 | UniParc:UPI0002542F2A | UniProt:M4CS08 | MapMan:11.4.1.2 | : | : |
Description
AT3G53450 (E=8e-072) | unknown protein
Coordinates
chrA09:-:26746153..26748588
Molecular Weight (calculated)
18354.0 Da
IEP (calculated)
5.929
GRAVY (calculated)
-0.151
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVNTKTIIQ KSKFGRICVF CGSSQGKKSS YQDAAVDLGN ELVSRNIDLV YGGGSIVLMG FVSQAVHDGG RHVIGVIPKT LMPRELTGET VGEVRAVADM
101: HQRKAEMARH SDAFIALPGG YGTLEELLEV ITWAQLGIHD KPEYSPCHES VASKLCWEIE RIGYSSED
101: HQRKAEMARH SDAFIALPGG YGTLEELLEV ITWAQLGIHD KPEYSPCHES VASKLCWEIE RIGYSSED
001: MEIESKFKRI CVFCGSSAGN KVSYKDAAIE LGTELVSRNI DLVYGGGSIG LMGLISQAVF NGGRHVIGVI PKTLMPREIT GETVGEVKAV ADMHQRKAEM
101: AKHSDAFIAL PGGYGTLEEL LEVITWAQLG IHDKPVGLLN VEGYYNSLLS FIDKAVEEGF ISPTARHIIV SAPSAKELVK KLEDYVPRHE KVASKKSWEM
201: EQIGLSPTCE ISR
101: AKHSDAFIAL PGGYGTLEEL LEVITWAQLG IHDKPVGLLN VEGYYNSLLS FIDKAVEEGF ISPTARHIIV SAPSAKELVK KLEDYVPRHE KVASKKSWEM
201: EQIGLSPTCE ISR
Arabidopsis Description
LOG1Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178VS96]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.