CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029127_P001	Maize	mitochondrion	83.11	80.18
Os03t0109300-01	Rice	mitochondrion	68.95	71.56
TraesCS4B01G250400.1	Wheat	mitochondrion	66.67	71.22
EER94070	Sorghum	mitochondrion	67.12	71.01
TraesCS4A01G413200.1	Wheat	mitochondrion	66.67	70.87
TraesCS4B01G313800.1	Wheat	mitochondrion	66.21	70.73
TraesCS4D01G310800.1	Wheat	mitochondrion	66.21	70.73
KRH15578	Soybean	cytosol	24.2	69.74
TraesCS4D01G250200.1	Wheat	mitochondrion	34.7	67.26
VIT_06s0004g02680.t01	Wine grape	cytosol, mitochondrion, nucleus	64.38	66.51
Bra034399.1-P	Field mustard	cytosol	63.93	65.73
Bra017202.1-P	Field mustard	cytosol	62.1	64.76
PGSC0003DMT400055525	Potato	cytosol	64.38	64.68
VIT_08s0040g01780.t01	Wine grape	cytosol	64.38	64.68
Solyc09g007830.2.1	Tomato	cytosol	64.38	64.68
AT5G03270.1	Thale cress	cytosol	59.36	64.68
GSMUA_Achr6P36490_001	Banana	cytosol	63.93	64.52
Bra011962.1-P	Field mustard	cytosol	62.56	64.32
KRH22873	Soybean	cytosol	61.19	64.11
Bra023107.1-P	Field mustard	cytosol	60.27	64.08
Solyc06g075090.2.1	Tomato	cytosol	55.71	63.87
KRH26448	Soybean	cytosol	60.73	63.64
GSMUA_Achr1P09040_001	Banana	cytosol	63.01	63.3
TraesCS4A01G054500.1	Wheat	mitochondrion	19.63	63.24
TraesCS4D01G250300.1	Wheat	mitochondrion	19.63	63.24
KRH29895	Soybean	cytosol	63.47	63.18
CDY44352	Canola	cytosol	58.45	63.05
Solyc10g084150.1.1	Tomato	cytosol	63.01	62.73
PGSC0003DMT400027157	Potato	cytosol	63.01	62.73
Bra003135.1-P	Field mustard	cytosol	47.49	62.28
CDY62895	Canola	cytosol	56.16	62.12
KRG95991	Soybean	cytosol	61.64	61.64
KRH67693	Soybean	cytosol	61.19	61.19
KRH19875	Soybean	cytosol	61.19	61.19
Bra039788.1-P	Field mustard	cytosol	46.58	61.08
Bra007000.1-P	Field mustard	cytosol	46.12	60.12
KRH25030	Soybean	cytosol	63.93	60.09
PGSC0003DMT400020890	Potato	cytosol	60.27	57.89
Solyc11g069570.1.1	Tomato	cytosol	61.64	57.69
KRH15614	Soybean	cytosol, extracellular, plastid	17.81	56.52
KRH32483	Soybean	cytosol, golgi, mitochondrion	45.21	54.7
EES05457	Sorghum	cytosol	60.73	54.51
EER97131	Sorghum	cytosol	57.99	54.04
OQU88832	Sorghum	cytosol, plastid	55.71	53.51
EES11120	Sorghum	cytosol	62.1	52.51
EES18588	Sorghum	cytosol	54.79	51.95
EES03190	Sorghum	cytosol	58.45	51.0
EER93620	Sorghum	cytosol	53.42	50.43
KRH07771	Soybean	cytosol	16.44	49.32
KXG22670	Sorghum	plastid	57.99	48.85
OQU87402	Sorghum	plastid	55.71	46.39
EER93059	Sorghum	cytosol	36.53	43.96

Protein Annotations

MapMan:11.4.1.2	Gene3D:3.40.50.450	UniProt:C5X0L6	EnsemblPlants:EER94862	ProteinID:EER94862	ProteinID:EER94862.2
GO:GO:0000184	GO:GO:0000339	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005845	GO:GO:0005846	GO:GO:0006139	GO:GO:0006406	GO:GO:0006412
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009691
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030529	GO:GO:0031053	GO:GO:0040029
InterPro:LOG	InterPro:LOG_fam	PFAM:PF03641	PANTHER:PTHR31223	PANTHER:PTHR31223:SF40	EnsemblPlantsGene:SORBI_3001G374200
SUPFAM:SSF102405	unigene:Sbi.7837	TIGRFAMs:TIGR00730	UniParc:UPI00081AB58E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:66276894..66280602

Molecular Weight (calculated)

23590.4 Da

IEP (calculated)

4.748

GRAVY (calculated)

0.055

Length

219 amino acids

Sequence
(BLAST)

001: MRRQQHPSSP TTPSRFKTIC VFCGSRQGNR TSYHDAAIAL AQQLVSRGID LVYGGGGIGL MGLVSVIPRT LMATPEIIGE TAGEVIAVAD MHQRKAEMER
101: QSDAFIALPG GYGTLEELLE MITWAQLGIH RKPVGLLNVD GYYDSLLAFM DQAVEEGFIS SSARGIIVQA PTAQDLMDKL EECVPYYDRV ALGLSWEARV
201: VVVKDDAGAD SGTISVSGI

Best Arabidopsis Sequence Match ( AT2G28305.1 )
(BLAST)

001: MEIESKFKRI CVFCGSSAGN KVSYKDAAIE LGTELVSRNI DLVYGGGSIG LMGLISQAVF NGGRHVIGVI PKTLMPREIT GETVGEVKAV ADMHQRKAEM
101: AKHSDAFIAL PGGYGTLEEL LEVITWAQLG IHDKPVGLLN VEGYYNSLLS FIDKAVEEGF ISPTARHIIV SAPSAKELVK KLEDYVPRHE KVASKKSWEM
201: EQIGLSPTCE ISR

Arabidopsis Description

LOG1Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178VS96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.