Factsheet for PGSC0003DMT400055525

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g007830.2.1	Tomato	cytosol	99.54	99.54
PGSC0003DMT400027157	Potato	cytosol	93.58	92.73
CDX91344	Canola	mitochondrion	83.49	91.46
CDX79722	Canola	cytosol	83.49	88.35
CDY52759	Canola	cytosol	86.7	87.91
Bra023107.1-P	Field mustard	cytosol	83.03	87.86
CDY46763	Canola	cytosol	83.03	87.86
Bra017202.1-P	Field mustard	cytosol	84.4	87.62
GSMUA_Achr6P36490_001	Banana	cytosol	87.16	87.56
CDX73553	Canola	cytosol	78.9	87.31
KRG95991	Soybean	cytosol	87.61	87.21
CDY30875	Canola	cytosol	85.78	86.98
KRH67693	Soybean	cytosol	87.16	86.76
KRH19875	Soybean	cytosol	87.16	86.76
CDX76213	Canola	cytosol	80.28	86.63
AT3G53450.1	Thale cress	cytosol	85.32	86.51
VIT_08s0040g01780.t01	Wine grape	cytosol	86.24	86.24
Bra003135.1-P	Field mustard	cytosol	66.06	86.23
Bra039788.1-P	Field mustard	cytosol	65.6	85.63
Bra007000.1-P	Field mustard	cytosol	65.14	84.52
GSMUA_Achr1P09040_001	Banana	cytosol	83.03	83.03
TraesCS1A01G156100.1	Wheat	mitochondrion	78.9	82.69
TraesCS1B01G173200.1	Wheat	mitochondrion	78.9	82.69
TraesCS1D01G154700.1	Wheat	mitochondrion	78.9	82.69
Zm00001d014016_P001	Maize	mitochondrion, nucleus	78.44	82.61
EER94070	Sorghum	mitochondrion	77.52	81.64
CDX74979	Canola	cytosol	84.4	80.35
CDX78180	Canola	cytosol	85.78	77.59
AT2G37210.2	Thale cress	cytosol	84.4	76.99
TraesCS4A01G413200.1	Wheat	mitochondrion	72.48	76.7
TraesCS4B01G250400.1	Wheat	mitochondrion	72.02	76.59
TraesCS4D01G250300.1	Wheat	mitochondrion	23.85	76.47
PGSC0003DMT400009551	Potato	cytosol, mitochondrion, plastid	78.9	76.44
PGSC0003DMT400020890	Potato	cytosol	79.82	76.32
TraesCS4D01G310800.1	Wheat	mitochondrion	71.56	76.1
TraesCS4A01G054500.1	Wheat	mitochondrion	23.39	75.0
TraesCS4B01G313800.1	Wheat	mitochondrion	70.18	74.63
PGSC0003DMT400042349	Potato	cytosol	73.39	73.39
PGSC0003DMT400072345	Potato	cytosol	76.15	72.81
Zm00001d003013_P001	Maize	cytosol	79.82	69.88
EES05457	Sorghum	cytosol	77.06	68.85
TraesCS2A01G380600.1	Wheat	cytosol	76.61	67.89
TraesCS2D01G376900.1	Wheat	cytosol	76.61	67.89
Zm00001d029127_P001	Maize	mitochondrion	70.64	67.84
TraesCS4D01G250200.1	Wheat	mitochondrion	34.86	67.26
EES11120	Sorghum	cytosol	79.36	66.8
Zm00001d025868_P002	Maize	cytosol	77.06	66.4
TraesCS1D01G003500.1	Wheat	cytosol	72.02	65.69
HORVU2Hr1G089620.5	Barley	cytosol	78.9	65.4
EER94862	Sorghum	mitochondrion, plastid	64.68	64.38
PGSC0003DMT400081828	Potato	mitochondrion	60.09	63.9
PGSC0003DMT400021223	Potato	cytosol	61.47	62.91
TraesCS2B01G397600.2	Wheat	cytosol	76.61	59.64
HORVU4Hr1G079860.4	Barley	cytosol, nucleus	38.07	27.48

Protein Annotations

EntrezGene:102592821	MapMan:11.4.1.2	Gene3D:3.40.50.450	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009987	GO:GO:0016787	InterPro:LOG
InterPro:LOG_fam	UniProt:M1BY37	PFAM:PF03641	EnsemblPlantsGene:PGSC0003DMG400021561	PGSC:PGSC0003DMG400021561	EnsemblPlants:PGSC0003DMT400055525
PANTHER:PTHR31223	PANTHER:PTHR31223:SF17	SUPFAM:SSF102405	TIGRFAMs:TIGR00730	UniParc:UPI0002951FCB	RefSeq:XP_006354329.1

Description

Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Source:PGSC_GENE;Acc:PGSC0003DMG400021561]

Coordinates

chr9:+:5646681..5651020

Molecular Weight (calculated)

23692.6 Da

IEP (calculated)

5.117

GRAVY (calculated)

-0.044

Length

218 amino acids

Sequence
(BLAST)

001: MEMGSDVMVS KFKRICVFCG SSQGKKSSYQ DAAIELGKEL VSRNIDLVYG GGSIGLMGLV SQAVHDGGRH VIGVIPKTLM PRELTGETVG EVKAVAGMHQ
101: RKAEMARHSD AFIALPGGYG TLEELLEVIT WAQLGIHDKP VGLLNVDGYY NSLLSFIDKA VEEGFISPNA RQIIVSAPTA TELVEKLEEY VPCHESVASK
201: LNWETEQLGY PQVQEIAR

Best Arabidopsis Sequence Match ( AT2G37210.1 )
(BLAST)

001: MEIKGESMQK SKFRRICVFC GSSQGKKSSY QDAAVDLGNE LVSRNIDLVY GGGSIGLMGL VSQAVHDGGR HVIGIIPKTL MPRELTGETV GEVRAVADMH
101: QRKAEMAKHS DAFIALPGGY GTLEELLEVI TWAQLGIHDK PVGLLNVDGY YNSLLSFIDK AVEEGFISPT AREIIVSAPT AKELVKKLEE YAPCHERVAT
201: KLCWEMERIG YSSEE

Arabidopsis Description

Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:F4IQ18]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.