Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52759 | Canola | cytosol | 97.21 | 97.21 |
| Bra003135.1-P | Field mustard | cytosol | 75.35 | 97.01 |
| CDX76213 | Canola | cytosol | 90.23 | 96.04 |
| Bra039788.1-P | Field mustard | cytosol | 74.42 | 95.81 |
| CDY30875 | Canola | cytosol | 95.35 | 95.35 |
| Bra007000.1-P | Field mustard | cytosol | 73.95 | 94.64 |
| CDX73553 | Canola | cytosol | 85.58 | 93.4 |
| CDX78180 | Canola | cytosol | 95.81 | 85.48 |
| Solyc09g007830.2.1 | Tomato | cytosol | 86.51 | 85.32 |
| PGSC0003DMT400055525 | Potato | cytosol | 86.51 | 85.32 |
| PGSC0003DMT400027157 | Potato | cytosol | 86.05 | 84.09 |
| KRG95991 | Soybean | cytosol | 85.12 | 83.56 |
| KRH19875 | Soybean | cytosol | 84.65 | 83.11 |
| VIT_08s0040g01780.t01 | Wine grape | cytosol | 84.19 | 83.03 |
| GSMUA_Achr6P36490_001 | Banana | cytosol | 83.72 | 82.95 |
| Solyc10g084150.1.1 | Tomato | cytosol | 84.65 | 82.73 |
| KRH67693 | Soybean | cytosol | 84.19 | 82.65 |
| AT2G37210.2 | Thale cress | cytosol | 91.63 | 82.43 |
| AT2G28305.1 | Thale cress | cytosol | 80.0 | 80.75 |
| GSMUA_Achr1P09040_001 | Banana | cytosol | 80.93 | 79.82 |
| AT5G03270.1 | Thale cress | cytosol | 72.56 | 77.61 |
| AT5G06300.1 | Thale cress | cytosol | 77.21 | 76.5 |
| AT2G35990.1 | Thale cress | cytosol | 66.51 | 67.14 |
| AT4G35190.1 | Thale cress | cytosol | 67.44 | 63.6 |
| AT5G11950.1 | Thale cress | cytosol | 62.33 | 62.04 |
| AT5G26140.2 | Thale cress | cytosol | 37.21 | 48.78 |
Protein Annotations
| MapMan:11.4.1.2 | Gene3D:3.40.50.450 | EntrezGene:824513 | UniProt:A0A178V9S8 | ProteinID:AEE79088.1 | ArrayExpress:AT3G53450 |
| EnsemblPlantsGene:AT3G53450 | RefSeq:AT3G53450 | TAIR:AT3G53450 | RefSeq:AT3G53450-TAIR-G | EnsemblPlants:AT3G53450.1 | TAIR:AT3G53450.1 |
| ProteinID:CAB67652.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009691 | GO:GO:0009987 | GO:GO:0016787 | InterPro:LOG | InterPro:LOG_fam | RefSeq:NP_190913.1 |
| ProteinID:OAP02544.1 | PFAM:PF03641 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 |
| PANTHER:PTHR31223 | PANTHER:PTHR31223:SF17 | UniProt:Q9LFH3 | SUPFAM:SSF102405 | TIGRFAMs:TIGR00730 | UniParc:UPI000004884E |
Description
LOG4Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178V9S8]
Coordinates
chr3:-:19812977..19815666
Molecular Weight (calculated)
23546.2 Da
IEP (calculated)
4.968
GRAVY (calculated)
-0.126
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVNNETMQK SKFGRICVFC GSSQGKKSSY QDAAVDLGNE LVLRNIDLVY GGGSIGLMGL VSQAVHDGGR HVIGVIPKTL MPRELTGETV GEVRAVADMH
101: QRKAEMARHS DAFIALPGGY GTLEELLEVI TWAQLGIHDK PVGLLNVDGY YNSLLSFIDK AVEEGFISTN ARQIIISAPT AKELVKKLEE YSPCHESVAT
201: KLCWEIERID YSSED
101: QRKAEMARHS DAFIALPGGY GTLEELLEVI TWAQLGIHDK PVGLLNVDGY YNSLLSFIDK AVEEGFISTN ARQIIISAPT AKELVKKLEE YSPCHESVAT
201: KLCWEIERID YSSED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.