CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13293	Canola	cytosol	56.44	96.61
CDY30875	Canola	cytosol	99.01	93.02
Bra039788.1-P	Field mustard	cytosol	75.74	91.62
CDY52759	Canola	cytosol	97.03	91.16
AT3G53450.1	Thale cress	cytosol	96.04	90.23
CDX73553	Canola	cytosol	84.65	86.8
CDX91344	Canola	mitochondrion	84.65	85.93
CDX79722	Canola	cytosol	87.13	85.44
CDY46763	Canola	cytosol	85.64	83.98
CDX78180	Canola	cytosol	96.53	80.91
Solyc09g007830.2.1	Tomato	cytosol	86.63	80.28
PGSC0003DMT400055525	Potato	cytosol	86.63	80.28
PGSC0003DMT400027157	Potato	cytosol	86.14	79.09
Solyc10g084150.1.1	Tomato	cytosol	84.16	77.27
KRG95991	Soybean	cytosol	83.66	77.17
GSMUA_Achr6P36490_001	Banana	cytosol	82.67	76.96
KRH19875	Soybean	cytosol	83.17	76.71
VIT_08s0040g01780.t01	Wine grape	cytosol	82.67	76.61
KRH67693	Soybean	cytosol	82.67	76.26
CDX74979	Canola	cytosol	85.64	75.55
CDY30498	Canola	cytosol	78.22	74.18
GSMUA_Achr1P09040_001	Banana	cytosol	79.7	73.85
CDX71364	Canola	cytosol	77.23	73.24
CDY04551	Canola	cytosol	77.23	73.24
CDX77168	Canola	cytosol	77.23	73.24
CDY44352	Canola	cytosol	70.79	70.44
CDY04985	Canola	cytosol	74.75	70.23
CDY62895	Canola	cytosol	68.32	69.7
CDY40411	Canola	cytosol	63.86	60.56
CDY32063	Canola	cytosol	62.38	59.15
CDX69118	Canola	cytosol	65.35	58.93
CDX79649	Canola	cytosol	52.97	57.84
CDY65870	Canola	cytosol	61.88	57.08
CDX97157	Canola	cytosol	60.89	56.94
CDX69717	Canola	cytosol	60.89	56.94
CDY52642	Canola	cytosol	64.85	55.98
CDX91185	Canola	cytosol	61.88	55.8
CDX76318	Canola	cytosol	62.87	55.7
CDX87066	Canola	cytosol	50.0	52.88
CDY19786	Canola	cytosol	50.0	52.88
CDY17522	Canola	cytosol	57.92	51.09
CDY48150	Canola	mitochondrion	25.25	42.5

Protein Annotations

EnsemblPlants:CDX76213	EnsemblPlantsGene:GSBRNA2T00126532001	Gene3D:3.40.50.450	GO:A0A078CMC2	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009691	GO:GO:0009987	InterPro:LOG	InterPro:LOG_fam	PANTHER:PTHR31223
PANTHER:PTHR31223:SF17	PFAM:PF03641	ProteinID:CDX76213	ProteinID:CDX76213.1	SEG:seg	SUPFAM:SSF102405
TIGRFAMs:TIGR00730	UniParc:UPI0004EEFEDF	MapMan:11.4.1.2	:	:	:

Description

BnaA04g04770D

Coordinates

chrLK031806:+:1875627..1878050

Molecular Weight (calculated)

21971.3 Da

IEP (calculated)

4.943

GRAVY (calculated)

-0.123

Length

202 amino acids

Sequence
(BLAST)

001: MEVNNDTMQK SKFGRICVFC GSSQGKKSSY QDAAVDLGNE LVSRNIDLVY GGGSIGLMGI VSQVVHDGGR HVIGVIPKTL MPRELTGETV GEVRAVADMH
101: QRKAEMARHS DAFIALPGGY GTLEELLEVG LLNVDGYYSS LLSFIDKAVE EGFISPNARQ IIISAPTAKE LVKKLEEYSP CHESVASKLC WEIERIGYSS
201: ED

Best Arabidopsis Sequence Match ( AT2G28305.1 )
(BLAST)

001: MEIESKFKRI CVFCGSSAGN KVSYKDAAIE LGTELVSRNI DLVYGGGSIG LMGLISQAVF NGGRHVIGVI PKTLMPREIT GETVGEVKAV ADMHQRKAEM
101: AKHSDAFIAL PGGYGTLEEL LEVITWAQLG IHDKPVGLLN VEGYYNSLLS FIDKAVEEGF ISPTARHIIV SAPSAKELVK KLEDYVPRHE KVASKKSWEM
201: EQIGLSPTCE ISR

Arabidopsis Description

LOG1Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178VS96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.