CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034399.1-P	Field mustard	cytosol	99.06	99.06
CDY30498	Canola	cytosol	99.06	99.06
CDX71364	Canola	cytosol	96.24	96.24
CDY04551	Canola	cytosol	96.24	96.24
AT2G28305.1	Thale cress	cytosol	95.31	95.31
VIT_06s0004g02680.t01	Wine grape	cytosol, mitochondrion, nucleus	85.92	86.32
CDX91344	Canola	mitochondrion	79.34	84.92
KRH22873	Soybean	cytosol	82.63	84.21
KRH26448	Soybean	cytosol	82.16	83.73
KRH29895	Soybean	cytosol	85.45	82.73
CDX79722	Canola	cytosol	79.81	82.52
CDY46763	Canola	cytosol	79.81	82.52
Solyc06g075090.2.1	Tomato	cytosol	72.3	80.63
CDY52759	Canola	cytosol	80.75	80.0
CDY13293	Canola	cytosol	44.13	79.66
CDX73553	Canola	cytosol	73.24	79.19
CDY30875	Canola	cytosol	79.81	79.07
KRH25030	Soybean	cytosol	85.92	78.54
CDX76213	Canola	cytosol	73.24	77.23
CDY62895	Canola	cytosol	71.36	76.77
CDY44352	Canola	cytosol	72.77	76.35
CDX74979	Canola	cytosol	79.81	74.24
PGSC0003DMT400020890	Potato	cytosol	78.4	73.25
CDY04985	Canola	cytosol	73.71	73.02
Solyc11g069570.1.1	Tomato	cytosol	79.34	72.22
CDX78180	Canola	cytosol	80.28	70.95
KRH32483	Soybean	cytosol, golgi, mitochondrion	58.69	69.06
CDX69118	Canola	cytosol	69.01	65.62
CDY40411	Canola	cytosol	65.26	65.26
CDY32063	Canola	cytosol	63.85	63.85
CDY52642	Canola	cytosol	69.95	63.68
CDX76318	Canola	cytosol	68.08	63.6
CDX97157	Canola	cytosol	64.32	63.43
CDX69717	Canola	cytosol	64.32	63.43
CDX79649	Canola	cytosol	54.93	63.24
CDY65870	Canola	cytosol	63.85	62.1
CDX87066	Canola	cytosol	55.4	61.78
CDY19786	Canola	cytosol	55.4	61.78
CDX91185	Canola	cytosol	64.32	61.16
CDY17522	Canola	cytosol	60.56	56.33
CDY48150	Canola	mitochondrion	30.05	53.33
Os03t0697200-00	Rice	nucleus	37.56	32.92

Protein Annotations

EnsemblPlants:CDX77168	EnsemblPlantsGene:GSBRNA2T00127799001	Gene3D:3.40.50.450	GO:A0A078CQ31	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009691	GO:GO:0009987	InterPro:LOG	InterPro:LOG_fam	PANTHER:PTHR31223
PANTHER:PTHR31223:SF39	PFAM:PF03641	ProteinID:CDX77168	ProteinID:CDX77168.1	SEG:seg	SUPFAM:SSF102405
TIGRFAMs:TIGR00730	UniParc:UPI0004EEF76D	MapMan:11.4.1.2	:	:	:

Description

BnaC04g39630D

Coordinates

chrLK031809:+:1662260..1666077

Molecular Weight (calculated)

23191.1 Da

IEP (calculated)

5.954

GRAVY (calculated)

-0.024

Length

213 amino acids

Sequence
(BLAST)

001: MEIEPKFKRI CVFCGSSAGN KTSYRDAAIE LGAELVSRNI DLVYGGGSIG LMGLISQAVY NGGRHVIGVI PKTLMPKEIT GETVGEVKAV ADMHQRKAEM
101: AKHSDAFIAL PGGYGTLEEL LEVITWAQLG IHDKPVGLLN VEGYYNSLLS FIDNAVEEGF ISPTARHIIV SAPSAKDLVM KLEEYVPRHE KVASKKSWEM
201: EQIGLSPTCE ISR

Best Arabidopsis Sequence Match ( AT2G28305.1 )
(BLAST)

001: MEIESKFKRI CVFCGSSAGN KVSYKDAAIE LGTELVSRNI DLVYGGGSIG LMGLISQAVF NGGRHVIGVI PKTLMPREIT GETVGEVKAV ADMHQRKAEM
101: AKHSDAFIAL PGGYGTLEEL LEVITWAQLG IHDKPVGLLN VEGYYNSLLS FIDKAVEEGF ISPTARHIIV SAPSAKELVK KLEDYVPRHE KVASKKSWEM
201: EQIGLSPTCE ISR

Arabidopsis Description

LOG1Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178VS96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.