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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY13293 Canola cytosol 57.87 96.61
CDY52759 Canola cytosol 94.92 86.98
CDX79722 Canola cytosol 90.36 86.41
AT3G53450.1 Thale cress cytosol 93.4 85.58
CDX91344 Canola mitochondrion 86.29 85.43
CDX76213 Canola cytosol 86.8 84.65
CDY30875 Canola cytosol 92.39 84.65
Bra007000.1-P Field mustard cytosol 72.08 84.52
CDY46763 Canola cytosol 88.32 84.47
PGSC0003DMT400055525 Potato cytosol 87.31 78.9
Solyc09g007830.2.1 Tomato cytosol 87.31 78.9
CDX78180 Canola cytosol 96.45 78.84
PGSC0003DMT400027157 Potato cytosol 87.82 78.64
KRG95991 Soybean cytosol 86.8 78.08
Solyc10g084150.1.1 Tomato cytosol 86.8 77.73
KRH67693 Soybean cytosol 85.79 77.17
VIT_08s0040g01780.t01 Wine grape cytosol 85.28 77.06
GSMUA_Achr6P36490_001 Banana cytosol 84.77 76.96
KRH19875 Soybean cytosol 85.28 76.71
CDY44352 Canola cytosol 78.17 75.86
CDY62895 Canola cytosol 75.63 75.25
CDX74979 Canola cytosol 87.31 75.11
GSMUA_Achr1P09040_001 Banana cytosol 82.74 74.77
CDY30498 Canola cytosol 79.7 73.71
CDY04551 Canola cytosol 79.19 73.24
CDX71364 Canola cytosol 79.19 73.24
CDX77168 Canola cytosol 79.19 73.24
CDY04985 Canola cytosol 79.19 72.56
CDY40411 Canola cytosol 67.51 62.44
CDX69118 Canola cytosol 70.56 62.05
CDY32063 Canola cytosol 65.99 61.03
CDX79649 Canola cytosol 56.35 60.0
CDY52642 Canola cytosol 71.07 59.83
CDX76318 Canola cytosol 68.02 58.77
CDY65870 Canola cytosol 64.97 58.45
CDX97157 Canola cytosol 62.94 57.41
CDX69717 Canola cytosol 62.94 57.41
CDX91185 Canola cytosol 64.97 57.14
CDX87066 Canola cytosol 53.3 54.97
CDY19786 Canola cytosol 53.3 54.97
CDY17522 Canola cytosol 59.9 51.53
CDY48150 Canola mitochondrion 27.92 45.83
Protein Annotations
EnsemblPlants:CDX73553EnsemblPlantsGene:GSBRNA2T00109084001Gene3D:3.40.50.450GO:A0A078CF32GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009691GO:GO:0009987InterPro:LOGInterPro:LOG_famPANTHER:PTHR31223
PANTHER:PTHR31223:SF17PFAM:PF03641ProteinID:CDX73553ProteinID:CDX73553.1SUPFAM:SSF102405TIGRFAMs:TIGR00730
UniParc:UPI0004EDBC1CMapMan:11.4.1.2::::
Description
BnaC08g24500D
Coordinates
chrLK031799:+:1129877..1132177
Molecular Weight (calculated)
21392.0 Da
IEP (calculated)
6.354
GRAVY (calculated)
0.041
Length
197 amino acids
Sequence
(BLAST)
001: MEVNTKTIIQ KSKFGRICVF CGSSQGKKSS YQDAAVDLGN ELVSRNIDLV YGGGSIGLMG FVSQAVHDGG RHVIGVIPKI LMPRELTGET VGEVRAVADM
101: HQRKAEMARH SDAFIALPGG YGTLEELLEV ITWAQLGIHD KPVGLLNVDG YYNSLLSFID KAVEEGFISP NARQIIISAP TAKELVKKLE VTCQLEF
Best Arabidopsis Sequence Match ( AT2G28305.1 )
(BLAST)
001: MEIESKFKRI CVFCGSSAGN KVSYKDAAIE LGTELVSRNI DLVYGGGSIG LMGLISQAVF NGGRHVIGVI PKTLMPREIT GETVGEVKAV ADMHQRKAEM
101: AKHSDAFIAL PGGYGTLEEL LEVITWAQLG IHDKPVGLLN VEGYYNSLLS FIDKAVEEGF ISPTARHIIV SAPSAKELVK KLEDYVPRHE KVASKKSWEM
201: EQIGLSPTCE ISR
Arabidopsis Description
LOG1Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178VS96]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.