Factsheet for PGSC0003DMT400027157

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g084150.1.1	Tomato	cytosol	96.82	96.82
PGSC0003DMT400055525	Potato	cytosol	92.73	93.58
CDX91344	Canola	mitochondrion	81.36	89.95
KRG95991	Soybean	cytosol	87.73	88.13
GSMUA_Achr6P36490_001	Banana	cytosol	86.82	88.02
CDY52759	Canola	cytosol	85.91	87.91
CDX73553	Canola	cytosol	78.64	87.82
KRH67693	Soybean	cytosol	87.27	87.67
CDY46763	Canola	cytosol	81.82	87.38
CDX79722	Canola	cytosol	81.82	87.38
Bra023107.1-P	Field mustard	cytosol	81.82	87.38
KRH19875	Soybean	cytosol	86.82	87.21
VIT_08s0040g01780.t01	Wine grape	cytosol	86.36	87.16
Bra017202.1-P	Field mustard	cytosol	82.73	86.67
CDY30875	Canola	cytosol	84.55	86.51
Bra003135.1-P	Field mustard	cytosol	65.45	86.23
CDX76213	Canola	cytosol	79.09	86.14
AT3G53450.1	Thale cress	cytosol	84.09	86.05
Bra039788.1-P	Field mustard	cytosol	64.55	85.03
Bra007000.1-P	Field mustard	cytosol	64.55	84.52
GSMUA_Achr1P09040_001	Banana	cytosol	82.73	83.49
Zm00001d014016_P001	Maize	mitochondrion, nucleus	75.45	80.19
TraesCS1D01G154700.1	Wheat	mitochondrion	75.45	79.81
TraesCS1A01G156100.1	Wheat	mitochondrion	75.45	79.81
TraesCS1B01G173200.1	Wheat	mitochondrion	75.45	79.81
EER94070	Sorghum	mitochondrion	74.55	79.23
CDX74979	Canola	cytosol	82.27	79.04
CDX78180	Canola	cytosol	85.0	77.59
AT2G37210.2	Thale cress	cytosol	83.18	76.57
TraesCS4D01G250300.1	Wheat	mitochondrion	23.64	76.47
PGSC0003DMT400009551	Potato	cytosol, mitochondrion, plastid	78.18	76.44
PGSC0003DMT400020890	Potato	cytosol	78.18	75.44
TraesCS4A01G054500.1	Wheat	mitochondrion	23.18	75.0
TraesCS4A01G413200.1	Wheat	mitochondrion	70.0	74.76
TraesCS4B01G250400.1	Wheat	mitochondrion	69.55	74.63
TraesCS4D01G310800.1	Wheat	mitochondrion	69.09	74.15
PGSC0003DMT400042349	Potato	cytosol	72.73	73.39
TraesCS4B01G313800.1	Wheat	mitochondrion	68.18	73.17
PGSC0003DMT400072345	Potato	cytosol	75.0	72.37
EES05457	Sorghum	cytosol	77.73	70.08
Zm00001d003013_P001	Maize	cytosol	79.09	69.88
TraesCS2A01G380600.1	Wheat	cytosol	76.82	68.7
TraesCS2D01G376900.1	Wheat	cytosol	76.82	68.7
EES11120	Sorghum	cytosol	79.55	67.57
Zm00001d025868_P002	Maize	cytosol	76.82	66.8
Zm00001d029127_P001	Maize	mitochondrion	68.64	66.52
HORVU2Hr1G089620.5	Barley	cytosol	78.18	65.4
PGSC0003DMT400081828	Potato	mitochondrion	60.91	65.37
TraesCS1D01G003500.1	Wheat	cytosol	70.0	64.44
TraesCS4D01G250200.1	Wheat	mitochondrion	32.73	63.72
EER94862	Sorghum	mitochondrion, plastid	62.73	63.01
PGSC0003DMT400021223	Potato	cytosol	60.91	62.91
TraesCS2B01G397600.2	Wheat	cytosol	76.82	60.36
HORVU4Hr1G079860.4	Barley	cytosol, nucleus	38.64	28.15

Protein Annotations

EntrezGene:102581470	MapMan:11.4.1.2	Gene3D:3.40.50.450	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009987	GO:GO:0016787	InterPro:LOG
InterPro:LOG_fam	UniProt:M1APA5	PFAM:PF03641	EnsemblPlantsGene:PGSC0003DMG400010477	PGSC:PGSC0003DMG400010477	EnsemblPlants:PGSC0003DMT400027157
PANTHER:PTHR31223	PANTHER:PTHR31223:SF17	SUPFAM:SSF102405	TIGRFAMs:TIGR00730	UniParc:UPI000296EEC7	RefSeq:XP_006339070.1

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010477]

Coordinates

chr10:+:54947721..54952054

Molecular Weight (calculated)

23970.0 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.108

Length

220 amino acids

Sequence
(BLAST)

001: MERESDVVVK GSKFKRICVF CGSSQGKKSS YQDAAIELGK ELVSRNIDLV YGGGSIGLMG LVSQAVHDGG RHVIGVIPKT LMPRELTGET VGEVKAVAGM
101: HQRKAEMARH SDAFIALPGG YGTLEELLEV ITWAQLGIHD KPVGLLNVDG YYNSLLSFID KAVEEGFISP NARHIIISAP SPKELVKKLE EYVPCHEGVA
201: SKLIWETEQL GYPQAHEISR

Best Arabidopsis Sequence Match ( AT2G37210.1 )
(BLAST)

001: MEIKGESMQK SKFRRICVFC GSSQGKKSSY QDAAVDLGNE LVSRNIDLVY GGGSIGLMGL VSQAVHDGGR HVIGIIPKTL MPRELTGETV GEVRAVADMH
101: QRKAEMAKHS DAFIALPGGY GTLEELLEVI TWAQLGIHDK PVGLLNVDGY YNSLLSFIDK AVEEGFISPT AREIIVSAPT AKELVKKLEE YAPCHERVAT
201: KLCWEMERIG YSSEE

Arabidopsis Description

Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:F4IQ18]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.