Factsheet for PGSC0003DMT400072345

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g082020.1.1	Tomato	cytosol	92.98	97.7
KRH72214	Soybean	cytosol	78.95	84.11
KRH32819	Soybean	cytosol	78.51	83.64
KRH67989	Soybean	cytosol	77.63	83.1
VIT_08s0007g02480.t01	Wine grape	cytosol	78.51	82.87
CDY04985	Canola	cytosol	78.07	82.79
KRG96247	Soybean	cytosol	77.19	82.63
PGSC0003DMT400042349	Potato	cytosol	78.95	82.57
AT5G06300.1	Thale cress	cytosol	77.63	81.57
Bra009182.1-P	Field mustard	cytosol	76.32	80.93
PGSC0003DMT400055525	Potato	cytosol	72.81	76.15
PGSC0003DMT400027157	Potato	cytosol	72.37	75.0
PGSC0003DMT400009551	Potato	cytosol, mitochondrion, plastid	70.18	71.11
GSMUA_Achr8P04060_001	Banana	cytosol	69.74	70.35
GSMUA_Achr2P08380_001	Banana	cytosol	70.18	69.87
PGSC0003DMT400020890	Potato	cytosol	66.23	66.23
Os01t0588900-01	Rice	cytosol	66.23	62.4
TraesCS3A01G211100.1	Wheat	cytosol	63.16	61.54
TraesCS3B01G241600.1	Wheat	cytosol	63.6	60.67
PGSC0003DMT400021223	Potato	cytosol	56.58	60.56
EES03190	Sorghum	cytosol	66.67	60.56
GSMUA_Achr6P35930_001	Banana	cytosol	58.77	60.09
PGSC0003DMT400081828	Potato	mitochondrion	53.95	60.0
TraesCS3D01G213900.1	Wheat	cytosol	63.16	59.75
Zm00001d011246_P002	Maize	cytosol	64.91	58.04
Os05t0591600-01	Rice	cytosol	66.67	57.14
KXG22670	Sorghum	plastid	64.91	56.92
TraesCS1B01G471300.1	Wheat	cytosol, plastid	64.47	54.85
Zm00001d039174_P001	Maize	plastid	63.6	54.72
TraesCS1D01G444500.1	Wheat	cytosol	63.6	53.11
HORVU1Hr1G094290.7	Barley	plastid	64.04	50.87
Bra028736.1-P	Field mustard	nucleus	52.63	46.69
HORVU3Hr1G050770.10	Barley	mitochondrion	63.16	41.26
Zm00001d044327_P001	Maize	plastid	42.11	37.21

Protein Annotations

EnsemblPlants:PGSC0003DMT400072345	EnsemblPlantsGene:PGSC0003DMG400028154	Gene3D:3.40.50.450	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009987	GO:GO:0016787	InterPro:LOG
InterPro:LOG_fam	PANTHER:PTHR31223	PANTHER:PTHR31223:SF20	PFAM:PF03641	PGSC:PGSC0003DMG400028154	SEG:seg
SUPFAM:SSF102405	TIGRFAMs:TIGR00730	UniParc:UPI000296494B	UniProt:M1CQ42	MapMan:11.4.1.2	:

Description

Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Source:PGSC_GENE;Acc:PGSC0003DMG400028154]

Coordinates

chr10:-:56042745..56046560

Molecular Weight (calculated)

25326.5 Da

IEP (calculated)

4.817

GRAVY (calculated)

-0.103

Length

228 amino acids

Sequence
(BLAST)

001: MEKVESSKFN RICVFCGSSS GKKTSYQEAA INLGKELVAI LEFDYSEFVE RRIDLVYGGG SVGLMGLVSQ AVHDGGRHVL GVIPKTLMPR ELTGETIGEL
101: REVSGMHQRK AEMARQADAF IALPGGYGTL EELLEVITWA QLGIHQKPVG LLNVEGYYNS LLSFIDKAVD EGFISPIARR IIVSAPTAKE LIRELEEHVP
201: EKDEIISKLI WEDEIQRYNY TPESSVPI

Best Arabidopsis Sequence Match ( AT5G06300.1 )
(BLAST)

001: MEETKSRFKR ICVFCGSSSG KKPSYQEAAI QLGNELVERR IDLVYGGGSV GLMGLVSQAV HHGGRHVLGV IPKTLMPREI TGETIGEVKA VADMHQRKAE
101: MARQADAFIA LPGGYGTLEE LLEVITWAQL GIHRKPVGLL NVDGYYNSLL TFIDKAVDEG FISPMARRII VSAPNAKELV RQLEEYEPEF DEITSKLVWD
201: EVDRISYVPG SEVATAT

Arabidopsis Description

LOG7Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.