Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 2
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g005680.2.1 | Tomato | mitochondrion | 97.07 | 97.55 |
| VIT_06s0004g00590.t01 | Wine grape | cytosol, mitochondrion | 79.51 | 79.51 |
| PGSC0003DMT400021223 | Potato | cytosol | 71.22 | 68.54 |
| PGSC0003DMT400027157 | Potato | cytosol | 65.37 | 60.91 |
| PGSC0003DMT400055525 | Potato | cytosol | 63.9 | 60.09 |
| PGSC0003DMT400009551 | Potato | cytosol, mitochondrion, plastid | 63.9 | 58.22 |
| PGSC0003DMT400020890 | Potato | cytosol | 63.9 | 57.46 |
| PGSC0003DMT400042349 | Potato | cytosol | 59.51 | 55.96 |
| PGSC0003DMT400072345 | Potato | cytosol | 60.0 | 53.95 |
Protein Annotations
| EntrezGene:102595783 | MapMan:11.4.1.2 | Gene3D:3.40.50.450 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009691 | GO:GO:0009987 | GO:GO:0016787 | InterPro:LOG |
| InterPro:LOG_fam | UniProt:M1D536 | PFAM:PF03641 | EnsemblPlantsGene:PGSC0003DMG400032129 | PGSC:PGSC0003DMG400032129 | EnsemblPlants:PGSC0003DMT400081828 |
| PANTHER:PTHR31223 | PANTHER:PTHR31223:SF15 | SUPFAM:SSF102405 | TIGRFAMs:TIGR00730 | UniParc:UPI000295F26F | RefSeq:XP_006354132.1 |
Description
Carboxy-lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400032129]
Coordinates
chr1:+:1308531..1313164
Molecular Weight (calculated)
22308.0 Da
IEP (calculated)
4.927
GRAVY (calculated)
0.047
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNFKKICVF CGSNSGYRKI FSDAALDLGR ELVERKIDLV YGGGSIGLMG LVSQAVYDGG CNVLGIIPRA LVSVEISGHA VGEVLIVSDM HERKAEMARR
101: ADAFIALPGG YGTMEELLEV ITWSQLGIHE KPVGLLNIDG YYDCLLGLFD KGVEEGFIKP SARNIVISAT SPKELLEKME EYVPIHNQVA PSRSWNTDEP
201: VTRSS
101: ADAFIALPGG YGTMEELLEV ITWSQLGIHE KPVGLLNIDG YYDCLLGLFD KGVEEGFIKP SARNIVISAT SPKELLEKME EYVPIHNQVA PSRSWNTDEP
201: VTRSS
001: MEDNQRSRFR KICVFCGSHS GHREVFSDAA IELGNELVKR KIDLVYGGGS VGLMGLISRR VYEGGLHVLG IIPKALMPIE ISGETVGDVR VVADMHERKA
101: AMAQEAEAFI ALPGGYGTME ELLEMITWSQ LGIHKKTVGL LNVDGYYNNL LALFDTGVEE GFIKPGARNI VVSAPTAKEL MEKMEEYTPS HMHVASHESW
201: KVEELGDYPG QENKPQ
101: AMAQEAEAFI ALPGGYGTME ELLEMITWSQ LGIHKKTVGL LNVDGYYNNL LALFDTGVEE GFIKPGARNI VVSAPTAKEL MEKMEEYTPS HMHVASHESW
201: KVEELGDYPG QENKPQ
Arabidopsis Description
LOG8Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178UJ28]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.