Factsheet for PGSC0003DMT400042349

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g007270.1.1	Tomato	cytosol	31.19	97.14
CDY04985	Canola	cytosol	81.65	82.79
KRH67989	Soybean	cytosol	80.73	82.63
KRG96247	Soybean	cytosol	80.28	82.16
AT5G06300.1	Thale cress	cytosol	81.65	82.03
Bra009182.1-P	Field mustard	cytosol	80.73	81.86
KRH72214	Soybean	cytosol	79.82	81.31
VIT_08s0007g02480.t01	Wine grape	cytosol	80.28	81.02
KRH32819	Soybean	cytosol	79.36	80.84
PGSC0003DMT400072345	Potato	cytosol	82.57	78.95
PGSC0003DMT400055525	Potato	cytosol	73.39	73.39
PGSC0003DMT400027157	Potato	cytosol	73.39	72.73
PGSC0003DMT400009551	Potato	cytosol, mitochondrion, plastid	73.85	71.56
GSMUA_Achr8P04060_001	Banana	cytosol	71.1	68.58
PGSC0003DMT400020890	Potato	cytosol	70.18	67.11
GSMUA_Achr2P08380_001	Banana	cytosol	68.35	65.07
Os01t0588900-01	Rice	cytosol	67.43	60.74
TraesCS3A01G211100.1	Wheat	cytosol	65.14	60.68
PGSC0003DMT400081828	Potato	mitochondrion	55.96	59.51
TraesCS3B01G241600.1	Wheat	cytosol	65.14	59.41
EES03190	Sorghum	cytosol	68.35	59.36
TraesCS3D01G213900.1	Wheat	cytosol	65.14	58.92
PGSC0003DMT400021223	Potato	cytosol	57.34	58.69
Zm00001d011246_P002	Maize	cytosol	68.35	58.43
GSMUA_Achr6P35930_001	Banana	cytosol	59.63	58.3
Os05t0591600-01	Rice	cytosol	67.43	55.26
KXG22670	Sorghum	plastid	65.6	55.0
TraesCS1B01G471300.1	Wheat	cytosol, plastid	66.06	53.73
Zm00001d039174_P001	Maize	plastid	64.68	53.21
TraesCS1D01G444500.1	Wheat	cytosol	65.14	52.01
HORVU1Hr1G094290.7	Barley	plastid	65.14	49.48
Bra028736.1-P	Field mustard	nucleus	54.59	46.3
HORVU3Hr1G050770.10	Barley	mitochondrion	65.14	40.69
Zm00001d044327_P001	Maize	plastid	42.66	36.05

Protein Annotations

EntrezGene:102583076	MapMan:11.4.1.2	Gene3D:3.40.50.450	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009987	GO:GO:0016787	InterPro:LOG
InterPro:LOG_fam	UniProt:M1BCW3	PFAM:PF03641	EnsemblPlantsGene:PGSC0003DMG400016419	PGSC:PGSC0003DMG400016419	EnsemblPlants:PGSC0003DMT400042349
PANTHER:PTHR31223	PANTHER:PTHR31223:SF20	SUPFAM:SSF102405	TIGRFAMs:TIGR00730	UniParc:UPI000294BE42	RefSeq:XP_006348482.1
SEG:seg	:	:	:	:	:

Description

Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Source:PGSC_GENE;Acc:PGSC0003DMG400016419]

Coordinates

chr1:+:3283634..3289271

Molecular Weight (calculated)

23950.8 Da

IEP (calculated)

5.375

GRAVY (calculated)

-0.190

Length

218 amino acids

Sequence
(BLAST)

001: MEEEKRSKFK RICVFCGSSS GKKPTYQEAA TELGKQLVEK GIDLVYGGGS VGLMGLVSQA VHDGGRHVLG VIPRTLMPRE ITGETIGEVR AVSGMHQRKA
101: EMARQADAFI ALPGGYGTLE ELLEVITWAQ LGIHRKPVGL LNVEGYYNSL LSFLDKAVDE GFISPIARKI IVSAQTAQQL VKQLEEHIPE TDEITSNLIW
201: DEGIQRFNYT TTESEVST

Best Arabidopsis Sequence Match ( AT5G06300.1 )
(BLAST)

001: MEETKSRFKR ICVFCGSSSG KKPSYQEAAI QLGNELVERR IDLVYGGGSV GLMGLVSQAV HHGGRHVLGV IPKTLMPREI TGETIGEVKA VADMHQRKAE
101: MARQADAFIA LPGGYGTLEE LLEVITWAQL GIHRKPVGLL NVDGYYNSLL TFIDKAVDEG FISPMARRII VSAPNAKELV RQLEEYEPEF DEITSKLVWD
201: EVDRISYVPG SEVATAT

Arabidopsis Description

LOG7Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.