Factsheet for PGSC0003DMT400021223

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g062820.2.1	Tomato	cytosol	98.12	98.12
KRH52208	Soybean	cytosol	78.4	78.4
AT5G11950.1	Thale cress	cytosol	78.87	77.78
VIT_04s0008g01040.t01	Wine grape	cytosol	78.4	76.96
Bra023351.1-P	Field mustard	cytosol	78.4	76.96
CDY65870	Canola	cytosol	77.93	75.8
KRH05430	Soybean	cytosol	76.53	75.46
CDX87066	Canola	cytosol	67.14	74.87
CDY19786	Canola	cytosol	67.14	74.87
Bra036562.1-P	Field mustard	cytosol	67.14	74.48
CDX69717	Canola	cytosol	75.12	74.07
CDX97157	Canola	cytosol	75.12	74.07
Bra008924.1-P	Field mustard	cytosol	75.12	74.07
CDX91185	Canola	cytosol	77.0	73.21
GSMUA_Achr3P25920_001	Banana	cytosol	73.24	72.9
KRH61527	Soybean	cytosol	76.06	72.0
PGSC0003DMT400081828	Potato	mitochondrion	68.54	71.22
Os01t0708500-01	Rice	mitochondrion	70.42	67.26
TraesCS3D01G251900.1	Wheat	cytosol	69.01	65.04
TraesCS3A01G251500.1	Wheat	plastid	69.48	64.63
TraesCS3B01G281000.1	Wheat	cytosol	68.54	64.6
CDY48150	Canola	mitochondrion	35.68	63.33
TraesCS1A01G362500.1	Wheat	cytosol	63.85	63.26
PGSC0003DMT400009551	Potato	cytosol, mitochondrion, plastid	66.2	62.67
GSMUA_Achr2P08480_001	Banana	mitochondrion	74.18	62.45
TraesCS1D01G367400.1	Wheat	cytosol	62.91	62.33
TraesCS1B01G379700.1	Wheat	cytosol	62.91	62.33
Zm00001d043692_P001	Maize	cytosol	69.48	62.18
PGSC0003DMT400055525	Potato	cytosol	62.91	61.47
Os05t0541200-01	Rice	cytosol, plasma membrane	64.32	61.44
EES18588	Sorghum	cytosol	66.2	61.04
PGSC0003DMT400027157	Potato	cytosol	62.91	60.91
PGSC0003DMT400020890	Potato	cytosol	63.38	59.21
Zm00001d038862_P001	Maize	cytosol, extracellular	64.79	58.47
PGSC0003DMT400042349	Potato	cytosol	58.69	57.34
AT5G26140.2	Thale cress	cytosol	44.13	57.32
OQU87402	Sorghum	plastid	69.95	56.65
PGSC0003DMT400072345	Potato	cytosol	60.56	56.58
HORVU3Hr1G066810.9	Barley	mitochondrion	59.62	45.52
HORVU1Hr1G079570.13	Barley	plastid	58.69	44.01

Protein Annotations

EntrezGene:102597227	MapMan:11.4.1.2	Gene3D:3.40.50.450	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009987	GO:GO:0016787	InterPro:LOG
InterPro:LOG_fam	UniProt:M1AET0	PFAM:PF03641	EnsemblPlantsGene:PGSC0003DMG400008218	PGSC:PGSC0003DMG400008218	EnsemblPlants:PGSC0003DMT400021223
PANTHER:PTHR31223	PANTHER:PTHR31223:SF4	SUPFAM:SSF102405	TIGRFAMs:TIGR00730	UniParc:UPI0002969C1A	RefSeq:XP_006351590.1

Description

Carboxy-lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400008218]

Coordinates

chr8:-:35249609..35253849

Molecular Weight (calculated)

23222.9 Da

IEP (calculated)

5.123

GRAVY (calculated)

-0.181

Length

213 amino acids

Sequence
(BLAST)

001: MENNSRSKFK KICVFCGSNP GHRKVFSDAA IDLGNELVSR KIDLVYGGGS VGLMGLISQR VQEGGCHVLG VIPKALVPIE ISGESVGDVK IVSDMHERKA
101: EMASQADAFI ALPGGYGTME ETLEMITWAQ LGIHKKPVGL LNVEGYYNSL LALFDNGVEE GFIKPGARDI VLADPSAREL LSKMEQYTPS HDHVAPHESW
201: HMEELAYPKE ESP

Best Arabidopsis Sequence Match ( AT5G11950.1 )
(BLAST)

001: MEDNQRSRFR KICVFCGSHS GHREVFSDAA IELGNELVKR KIDLVYGGGS VGLMGLISRR VYEGGLHVLG IIPKALMPIE ISGETVGDVR VVADMHERKA
101: AMAQEAEAFI ALPGGYGTME ELLEMITWSQ LGIHKKTVGL LNVDGYYNNL LALFDTGVEE GFIKPGARNI VVSAPTAKEL MEKMEEYTPS HMHVASHESW
201: KVEELGDYPG QENKPQ

Arabidopsis Description

LOG8Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178UJ28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.