CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043692_P001	Maize	cytosol	79.85	88.24
Os01t0708500-01	Rice	mitochondrion	73.38	86.55
TraesCS3D01G251900.1	Wheat	cytosol	73.0	84.96
TraesCS3B01G281000.1	Wheat	cytosol	72.24	84.07
TraesCS3A01G251500.1	Wheat	plastid	73.0	83.84
GSMUA_Achr3P25920_001	Banana	cytosol	60.84	74.77
EES18588	Sorghum	cytosol	64.64	73.59
VIT_04s0008g01040.t01	Wine grape	cytosol	58.17	70.51
Solyc08g062820.2.1	Tomato	cytosol	57.03	70.42
KRH52208	Soybean	cytosol	56.65	69.95
PGSC0003DMT400021223	Potato	cytosol	56.65	69.95
AT5G11950.1	Thale cress	cytosol	55.13	67.13
Bra023351.1-P	Field mustard	cytosol	55.13	66.82
KRH61527	Soybean	cytosol	56.65	66.22
CDX97157	Canola	cytosol	53.99	65.74
Bra008924.1-P	Field mustard	cytosol	53.99	65.74
KRH05430	Soybean	cytosol	53.99	65.74
CDX69717	Canola	cytosol	53.99	65.74
GSMUA_Achr2P08480_001	Banana	mitochondrion	63.12	65.61
CDY65870	Canola	cytosol	54.37	65.3
HORVU3Hr1G066810.9	Barley	mitochondrion	69.2	65.23
EER94070	Sorghum	mitochondrion	51.33	65.22
CDX91185	Canola	cytosol	54.37	63.84
CDY19786	Canola	cytosol	45.63	62.83
CDX87066	Canola	cytosol	45.63	62.83
Bra036562.1-P	Field mustard	cytosol	45.63	62.5
EES05457	Sorghum	cytosol	52.09	56.15
EER94862	Sorghum	mitochondrion, plastid	46.39	55.71
EER93620	Sorghum	cytosol	48.67	55.17
CDY48150	Canola	mitochondrion	25.1	55.0
EER97131	Sorghum	cytosol	48.29	54.04
OQU88832	Sorghum	cytosol, plastid	46.39	53.51
AT5G26140.2	Thale cress	cytosol	32.7	52.44
EES03190	Sorghum	cytosol	49.81	52.19
EES11120	Sorghum	cytosol	51.33	52.12
KXG22670	Sorghum	plastid	46.77	47.31
EER93059	Sorghum	cytosol	32.32	46.7

Protein Annotations

MapMan:11.4.1.2	Gene3D:3.40.50.450	UniProt:A0A1W0VZ71	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009987	GO:GO:0016787	InterPro:LOG
InterPro:LOG_fam	EnsemblPlants:OQU87402	ProteinID:OQU87402	ProteinID:OQU87402.1	PFAM:PF03641	PANTHER:PTHR31223
PANTHER:PTHR31223:SF4	EnsemblPlantsGene:SORBI_3003G273700	SUPFAM:SSF102405	TIGRFAMs:TIGR00730	UniParc:UPI0009DC8371	:

Description

hypothetical protein

Coordinates

chr3:-:60995156..60997704

Molecular Weight (calculated)

28346.3 Da

IEP (calculated)

5.657

GRAVY (calculated)

-0.151

Length

263 amino acids

Sequence
(BLAST)

001: MREALMPPSF EAPPSRPLSS KAKKPKPNTS LYPPSRRHCP LRSSAMGDTV ADAPEPSRFG RICVFCGSNP GNRAVYGDAA LDLGKELVAR GIDLVYGGGS
101: VGLMGLIAQT VLDGGCSVLG VIPRALMPLE ISGASVGEVK VVSDMHERKA EMARQADAFI ALPGGYGTME ELLEMITWSQ LGIHDKPVGL LNVDGYYDPL
201: LMLFDKGATE GFIKLDCRDI IVSAPTAHEL LEKMEHYTRS HQEVAPRTSW EMSELGYGKA PES

Best Arabidopsis Sequence Match ( AT5G11950.1 )
(BLAST)

001: MEDNQRSRFR KICVFCGSHS GHREVFSDAA IELGNELVKR KIDLVYGGGS VGLMGLISRR VYEGGLHVLG IIPKALMPIE ISGETVGDVR VVADMHERKA
101: AMAQEAEAFI ALPGGYGTME ELLEMITWSQ LGIHKKTVGL LNVDGYYNNL LALFDTGVEE GFIKPGARNI VVSAPTAKEL MEKMEEYTPS HMHVASHESW
201: KVEELGDYPG QENKPQ

Arabidopsis Description

LOG8Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178UJ28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.