Factsheet for Bra008924.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69717	Canola	cytosol	100.0	100.0
CDX97157	Canola	cytosol	98.61	98.61
Bra023351.1-P	Field mustard	cytosol	93.06	92.63
AT5G11950.1	Thale cress	cytosol	92.13	92.13
Bra036562.1-P	Field mustard	cytosol	74.54	83.85
KRH52208	Soybean	cytosol	79.63	80.75
VIT_04s0008g01040.t01	Wine grape	cytosol	80.09	79.72
Solyc08g062820.2.1	Tomato	cytosol	75.0	76.06
KRH61527	Soybean	cytosol	78.7	75.56
KRH05430	Soybean	cytosol	75.46	75.46
PGSC0003DMT400021223	Potato	cytosol	74.07	75.12
GSMUA_Achr3P25920_001	Banana	cytosol	68.98	69.63
TraesCS1B01G379700.1	Wheat	cytosol	64.81	65.12
TraesCS1A01G362500.1	Wheat	cytosol	64.81	65.12
Bra017202.1-P	Field mustard	cytosol	62.96	64.76
Bra034399.1-P	Field mustard	cytosol	63.43	64.32
Bra011962.1-P	Field mustard	cytosol	63.43	64.32
TraesCS1D01G367400.1	Wheat	cytosol	63.89	64.19
Os01t0708500-01	Rice	mitochondrion	66.2	64.13
Bra023107.1-P	Field mustard	cytosol	59.72	62.62
Bra009182.1-P	Field mustard	cytosol	62.04	62.33
TraesCS3D01G251900.1	Wheat	cytosol	64.81	61.95
Os05t0541200-01	Rice	cytosol, plasma membrane	63.89	61.88
Bra003135.1-P	Field mustard	cytosol	47.69	61.68
TraesCS3A01G251500.1	Wheat	plastid	65.28	61.57
TraesCS3B01G281000.1	Wheat	cytosol	64.35	61.5
Bra039788.1-P	Field mustard	cytosol	47.22	61.08
EES18588	Sorghum	cytosol	65.28	61.04
Bra007000.1-P	Field mustard	cytosol	46.76	60.12
Zm00001d038862_P001	Maize	cytosol, extracellular	65.28	59.75
Zm00001d043692_P001	Maize	cytosol	65.28	59.24
GSMUA_Achr2P08480_001	Banana	mitochondrion	68.52	58.5
Bra017270.1-P	Field mustard	cytosol	56.94	57.75
Bra011592.1-P	Field mustard	cytosol	60.19	55.56
Bra020803.1-P	Field mustard	cytosol	57.87	54.82
OQU87402	Sorghum	plastid	65.74	53.99
HORVU1Hr1G079570.13	Barley	plastid	59.72	45.42
HORVU3Hr1G066810.9	Barley	mitochondrion	55.09	42.65
Bra028736.1-P	Field mustard	nucleus	43.06	36.19
Bra028735.1-P	Field mustard	cytosol	17.13	29.37

Protein Annotations

EnsemblPlants:Bra008924.1	EnsemblPlants:Bra008924.1-P	EnsemblPlantsGene:Bra008924	Gene3D:3.40.50.450	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009987	GO:GO:0016787
InterPro:LOG	InterPro:LOG_fam	PANTHER:PTHR31223	PANTHER:PTHR31223:SF4	PFAM:PF03641	SUPFAM:SSF102405
TIGRFAMs:TIGR00730	UniParc:UPI0001B83799	UniProt:M4CXH7	MapMan:11.4.1.2	:	:

Description

AT5G11950 (E=3e-114) | protein homodimerization

Coordinates

chrA10:-:14430503..14431978

Molecular Weight (calculated)

23783.6 Da

IEP (calculated)

5.848

GRAVY (calculated)

-0.222

Length

216 amino acids

Sequence
(BLAST)

001: MEENQRSRFK KVCVFCGSHS GNREVFSDAA IELGNELVKR KIDLVYGGGS VGLMGLISRR VYEGGFHVLG IIPKALMPIE ISGETVGEVR VVADMHERKA
101: AMAQESEAFI ALPGGYGTME ELLEMITWSQ LGIHKKTVGI LNTDGYYNNL LALFDTGVQE GFIKPGARNI VVSAPTAKEL MEKMEEYTPS HKHVASHESW
201: NVEELGAYPG QQSNHQ

Best Arabidopsis Sequence Match ( AT5G11950.1 )
(BLAST)

001: MEDNQRSRFR KICVFCGSHS GHREVFSDAA IELGNELVKR KIDLVYGGGS VGLMGLISRR VYEGGLHVLG IIPKALMPIE ISGETVGDVR VVADMHERKA
101: AMAQEAEAFI ALPGGYGTME ELLEMITWSQ LGIHKKTVGL LNVDGYYNNL LALFDTGVEE GFIKPGARNI VVSAPTAKEL MEKMEEYTPS HMHVASHESW
201: KVEELGDYPG QENKPQ

Arabidopsis Description

LOG8Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178UJ28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.