Factsheet for Bra009182.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G06300.1	Thale cress	cytosol	98.14	97.23
CDY04985	Canola	cytosol	97.21	97.21
KRH32819	Soybean	cytosol	84.19	84.58
KRH72214	Soybean	cytosol	83.72	84.11
KRH67989	Soybean	cytosol	82.79	83.57
KRG96247	Soybean	cytosol	82.79	83.57
VIT_08s0007g02480.t01	Wine grape	cytosol	83.72	83.33
Solyc01g007270.1.1	Tomato	cytosol	26.98	82.86
Solyc10g082020.1.1	Tomato	cytosol	81.86	81.11
PGSC0003DMT400042349	Potato	cytosol	81.86	80.73
Bra023107.1-P	Field mustard	cytosol	75.35	78.64
Bra017202.1-P	Field mustard	cytosol	75.81	77.62
PGSC0003DMT400072345	Potato	cytosol	80.93	76.32
Bra003135.1-P	Field mustard	cytosol	58.14	74.85
Bra034399.1-P	Field mustard	cytosol	73.02	73.71
Bra017270.1-P	Field mustard	cytosol	73.02	73.71
Bra039788.1-P	Field mustard	cytosol	56.74	73.05
Bra007000.1-P	Field mustard	cytosol	56.74	72.62
Bra011962.1-P	Field mustard	cytosol	71.63	72.3
Bra011592.1-P	Field mustard	cytosol	73.02	67.09
Bra020803.1-P	Field mustard	cytosol	70.23	66.23
Bra023351.1-P	Field mustard	cytosol	62.79	62.21
Bra008924.1-P	Field mustard	cytosol	62.33	62.04
Bra036562.1-P	Field mustard	cytosol	54.42	60.94
Bra028736.1-P	Field mustard	nucleus	65.58	54.86
Bra028735.1-P	Field mustard	cytosol	22.33	38.1

Protein Annotations

EnsemblPlants:Bra009182.1	EnsemblPlants:Bra009182.1-P	EnsemblPlantsGene:Bra009182	Gene3D:3.40.50.450	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009987	GO:GO:0016787
InterPro:LOG	InterPro:LOG_fam	PANTHER:PTHR31223	PANTHER:PTHR31223:SF20	PFAM:PF03641	SEG:seg
SUPFAM:SSF102405	TIGRFAMs:TIGR00730	UniParc:UPI0002544FE9	UniProt:M4CY85	MapMan:11.4.1.2	:

Description

AT5G06300 (E=4e-109) | carboxy-lyase

Coordinates

chrA10:-:15557409..15560604

Molecular Weight (calculated)

23675.6 Da

IEP (calculated)

5.370

GRAVY (calculated)

-0.118

Length

215 amino acids

Sequence
(BLAST)

001: MEETKSRFKR ICVFCGSSSG NKPSYQEAAI QLGNELVERK IDLVYGGGSV GLMGLVSQAV HHGGRHVLGV IPKTLMPREI TGETIGEVKA VADMHQRKAE
101: MARQANAFIA LPGGYGTLEE LLEVITWAQL GIHRKPVGLL NVDGYYNSLL TFIDKAVDEG FISPMARRII VSAPNAKELV RQLEEYEPEF DEITSKLVWD
201: EVDRLSYVPG SEVAT

Best Arabidopsis Sequence Match ( AT5G06300.1 )
(BLAST)

001: MEETKSRFKR ICVFCGSSSG KKPSYQEAAI QLGNELVERR IDLVYGGGSV GLMGLVSQAV HHGGRHVLGV IPKTLMPREI TGETIGEVKA VADMHQRKAE
101: MARQADAFIA LPGGYGTLEE LLEVITWAQL GIHRKPVGLL NVDGYYNSLL TFIDKAVDEG FISPMARRII VSAPNAKELV RQLEEYEPEF DEITSKLVWD
201: EVDRISYVPG SEVATAT

Arabidopsis Description

LOG7Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.