Factsheet for Bra036562.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19786	Canola	cytosol	83.85	84.29
CDX87066	Canola	cytosol	83.85	84.29
Bra008924.1-P	Field mustard	cytosol	83.85	74.54
Bra023351.1-P	Field mustard	cytosol	83.33	73.73
KRH52208	Soybean	cytosol	77.08	69.48
Solyc08g062820.2.1	Tomato	cytosol	75.0	67.61
VIT_04s0008g01040.t01	Wine grape	cytosol	76.04	67.28
PGSC0003DMT400021223	Potato	cytosol	74.48	67.14
KRH61527	Soybean	cytosol	77.6	66.22
KRH05430	Soybean	cytosol	73.96	65.74
CDY48150	Canola	mitochondrion	40.1	64.17
GSMUA_Achr3P25920_001	Banana	cytosol	69.27	62.15
AT5G26140.2	Thale cress	cytosol	50.0	58.54
Bra011962.1-P	Field mustard	cytosol	60.94	54.93
Bra034399.1-P	Field mustard	cytosol	60.94	54.93
Bra009182.1-P	Field mustard	cytosol	60.94	54.42
Bra017202.1-P	Field mustard	cytosol	59.38	54.29
Os01t0708500-01	Rice	mitochondrion	63.02	54.26
TraesCS1A01G362500.1	Wheat	cytosol	60.42	53.95
TraesCS1B01G379700.1	Wheat	cytosol	60.42	53.95
TraesCS3D01G251900.1	Wheat	cytosol	63.02	53.54
TraesCS3A01G251500.1	Wheat	plastid	63.54	53.28
TraesCS3B01G281000.1	Wheat	cytosol	62.5	53.1
TraesCS1D01G367400.1	Wheat	cytosol	59.38	53.02
Bra023107.1-P	Field mustard	cytosol	56.77	52.91
GSMUA_Achr2P08480_001	Banana	mitochondrion	69.27	52.57
Os05t0541200-01	Rice	cytosol, plasma membrane	59.9	51.57
EES18588	Sorghum	cytosol	61.46	51.08
Zm00001d038862_P001	Maize	cytosol, extracellular	61.46	50.0
Zm00001d043692_P001	Maize	cytosol	61.46	49.58
Bra017270.1-P	Field mustard	cytosol	53.65	48.36
Bra011592.1-P	Field mustard	cytosol	57.81	47.44
Bra020803.1-P	Field mustard	cytosol	56.25	47.37
Bra003135.1-P	Field mustard	cytosol	41.15	47.31
Bra039788.1-P	Field mustard	cytosol	40.62	46.71
Bra007000.1-P	Field mustard	cytosol	40.1	45.83
OQU87402	Sorghum	plastid	62.5	45.63
HORVU1Hr1G079570.13	Barley	plastid	55.21	37.32
HORVU3Hr1G066810.9	Barley	mitochondrion	52.6	36.2
Bra028736.1-P	Field mustard	nucleus	39.58	29.57
Bra028735.1-P	Field mustard	cytosol	17.19	26.19

Protein Annotations

EnsemblPlants:Bra036562.1	EnsemblPlants:Bra036562.1-P	EnsemblPlantsGene:Bra036562	Gene3D:3.40.50.450	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009987	GO:GO:0016787
InterPro:LOG	InterPro:LOG_fam	PANTHER:PTHR31223	PANTHER:PTHR31223:SF4	PFAM:PF03641	SEG:seg
SUPFAM:SSF102405	TIGRFAMs:TIGR00730	UniParc:UPI0002541CF4	UniProt:M4F653	MapMan:11.4.1.2	:

Description

AT5G11950 (E=6e-042) | protein homodimerization

Coordinates

chrA09:+:1777006..1778258

Molecular Weight (calculated)

20829.2 Da

IEP (calculated)

6.243

GRAVY (calculated)

-0.046

Length

192 amino acids

Sequence
(BLAST)

001: MEENQRFKKV CVFCGSNSGH RDVFSLAAIE LGNELVKRKI DLVYGGGSVG LMGLISRRVS EGGCHVLGII PQALMPIEIS GETVGEVRIV ADMHERKAAM
101: AQEAEAFIAL PGEFSKTSKQ VGLLNVDGYY NNLLALFDTG VEEGFIKPGA RNIVVSAPSA KELLEKMELY TPSHKHIASH QSWKVEQLAG DS

Best Arabidopsis Sequence Match ( AT5G11950.1 )
(BLAST)

001: MEDNQRSRFR KICVFCGSHS GHREVFSDAA IELGNELVKR KIDLVYGGGS VGLMGLISRR VYEGGLHVLG IIPKALMPIE ISGETVGDVR VVADMHERKA
101: AMAQEAEAFI ALPGGYGTME ELLEMITWSQ LGIHKKTVGL LNVDGYYNNL LALFDTGVEE GFIKPGARNI VVSAPTAKEL MEKMEEYTPS HMHVASHESW
201: KVEELGDYPG QENKPQ

Arabidopsis Description

LOG8Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178UJ28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.