Factsheet for Zm00001d038862_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18588	Sorghum	cytosol	87.71	89.61
Os05t0541200-01	Rice	cytosol, plasma membrane	77.12	81.61
TraesCS1D01G367400.1	Wheat	cytosol	72.46	79.53
TraesCS1A01G362500.1	Wheat	cytosol	71.61	78.6
TraesCS1B01G379700.1	Wheat	cytosol	69.92	76.74
Zm00001d043692_P001	Maize	cytosol	69.92	69.33
GSMUA_Achr3P25920_001	Banana	cytosol	61.86	68.22
VIT_04s0008g01040.t01	Wine grape	cytosol	61.02	66.36
AT5G11950.1	Thale cress	cytosol	60.17	65.74
Bra023351.1-P	Field mustard	cytosol	60.17	65.44
CDX97157	Canola	cytosol	59.75	65.28
CDX69717	Canola	cytosol	59.75	65.28
Bra008924.1-P	Field mustard	cytosol	59.75	65.28
KRH52208	Soybean	cytosol	58.9	65.26
Solyc08g062820.2.1	Tomato	cytosol	58.9	65.26
PGSC0003DMT400021223	Potato	cytosol	58.47	64.79
CDY65870	Canola	cytosol	59.32	63.93
Zm00001d014016_P001	Maize	mitochondrion, nucleus	55.93	63.77
CDY19786	Canola	cytosol	50.85	62.83
CDX87066	Canola	cytosol	50.85	62.83
KRH05430	Soybean	cytosol	57.2	62.5
CDX91185	Canola	cytosol	59.32	62.5
KRH61527	Soybean	cytosol	58.9	61.78
Bra036562.1-P	Field mustard	cytosol	50.0	61.46
GSMUA_Achr2P08480_001	Banana	mitochondrion	62.71	58.5
Zm00001d021450_P001	Maize	cytosol	55.08	56.03
Zm00001d029127_P001	Maize	mitochondrion	53.39	55.51
Zm00001d003013_P001	Maize	cytosol	57.63	54.62
HORVU1Hr1G079570.13	Barley	plastid	65.25	54.23
Zm00001d025868_P002	Maize	cytosol	56.36	52.57
CDY48150	Canola	mitochondrion	26.27	51.67
Zm00001d033605_P001	Maize	cytosol	51.69	51.26
AT5G26140.2	Thale cress	cytosol	34.32	49.39
Zm00001d011246_P002	Maize	cytosol	52.97	49.02
Zm00001d039174_P001	Maize	plastid	51.27	45.66
Zm00001d044327_P001	Maize	plastid	36.44	33.33

Protein Annotations

EntrezGene:108410394	MapMan:11.4.1.2	Gene3D:3.40.50.450	ProteinID:AQK88087.1	EMBL:BT063692	UniProt:C0P5X3
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009691
GO:GO:0009987	GO:GO:0016787	InterPro:LOG	InterPro:LOG_fam	PFAM:PF03641	PANTHER:PTHR31223
PANTHER:PTHR31223:SF16	SUPFAM:SSF102405	TIGRFAMs:TIGR00730	UniParc:UPI0001948E41	EnsemblPlantsGene:Zm00001d038862	EnsemblPlants:Zm00001d038862_P001
EnsemblPlants:Zm00001d038862_T001	SEG:seg	:	:	:	:

Description

Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8

Coordinates

chr6:+:166027177..166029976

Molecular Weight (calculated)

24825.8 Da

IEP (calculated)

5.111

GRAVY (calculated)

0.014

Length

236 amino acids

Sequence
(BLAST)

001: MGDGEAAVPS RFRTVCVFCG SNAGRRKVYA DAALELGHEL VRRGINLVYG GGSIGLMGVI ARTVRHGGCH VLGVIPKALM PIEISGESVG EVRVVDDMHQ
101: RKAEMARQSQ AFIALPGGYG TMEELLEMIT WCQLGIHDKP VGLLNVDGYY DPLLALFEKG AAEGFISTDC SQIFVSAPTA SELLTKMEQY TRVHQEVAPA
201: TSWEISELGY GRGGDAGAAT PPAAAAGGAE EGKGGS

Best Arabidopsis Sequence Match ( AT5G11950.1 )
(BLAST)

001: MEDNQRSRFR KICVFCGSHS GHREVFSDAA IELGNELVKR KIDLVYGGGS VGLMGLISRR VYEGGLHVLG IIPKALMPIE ISGETVGDVR VVADMHERKA
101: AMAQEAEAFI ALPGGYGTME ELLEMITWSQ LGIHKKTVGL LNVDGYYNNL LALFDTGVEE GFIKPGARNI VVSAPTAKEL MEKMEEYTPS HMHVASHESW
201: KVEELGDYPG QENKPQ

Arabidopsis Description

LOG8Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178UJ28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.