Factsheet for PGSC0003DMT400009551

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

mitochondrion 3
extracellular 1
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g081290.2.1	Tomato	cytosol	99.56	99.56
VIT_18s0001g14030.t01	Wine grape	mitochondrion	84.89	88.43
KRH51716	Soybean	cytosol	82.67	84.16
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plastid	57.78	83.87
KRH05931	Soybean	cytosol	80.0	83.72
KRH61054	Soybean	cytosol	82.22	82.22
GSMUA_Achr11P...	Banana	cytosol, plastid	80.0	82.19
KRH17410	Soybean	cytosol	77.33	81.69
GSMUA_Achr8P19190_001	Banana	cytosol	78.67	79.02
PGSC0003DMT400055525	Potato	cytosol	76.44	78.9
PGSC0003DMT400027157	Potato	cytosol	76.44	78.18
PGSC0003DMT400042349	Potato	cytosol	71.56	73.85
GSMUA_Achr2P00980_001	Banana	cytosol	79.56	72.47
PGSC0003DMT400072345	Potato	cytosol	71.11	70.18
AT2G35990.1	Thale cress	cytosol	66.22	69.95
CDY40411	Canola	cytosol	65.78	69.48
Bra017270.1-P	Field mustard	cytosol	65.33	69.01
PGSC0003DMT400020890	Potato	cytosol	69.33	68.42
CDY32063	Canola	cytosol	64.44	68.08
CDX79649	Canola	cytosol	55.56	67.57
PGSC0003DMT400021223	Potato	cytosol	62.67	66.2
PGSC0003DMT400081828	Potato	mitochondrion	58.22	63.9
Os03t0857900-02	Rice	nucleus	69.78	63.82
HORVU5Hr1G124750.1	Barley	cytosol	68.44	62.1
TraesCS4A01G318100.1	Wheat	plastid	68.0	61.69
TraesCS5D01G568500.1	Wheat	cytosol	67.11	60.89
TraesCS4A01G317900.1	Wheat	plastid	66.22	60.82
TraesCS5D01G568400.1	Wheat	plastid	63.11	60.43
TraesCS5B01G561300.1	Wheat	plastid	67.11	60.4
TraesCS5B01G561400.1	Wheat	plastid	65.78	59.92
EER93059	Sorghum	cytosol	40.0	49.45

Protein Annotations

EntrezGene:102592408	MapMan:11.4.1.2	Gene3D:3.40.50.450	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009987	GO:GO:0016787	InterPro:LOG
InterPro:LOG_fam	UniProt:M0ZWH1	PFAM:PF03641	EnsemblPlantsGene:PGSC0003DMG400003726	PGSC:PGSC0003DMG400003726	EnsemblPlants:PGSC0003DMT400009551
PANTHER:PTHR31223	PANTHER:PTHR31223:SF19	SUPFAM:SSF102405	TIGRFAMs:TIGR00730	UniParc:UPI0002951B7C	RefSeq:XP_006342033.1
SEG:seg	:	:	:	:	:

Description

Carboxy-lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400003726]

Coordinates

chr4:+:70714232..70717797

Molecular Weight (calculated)

24583.7 Da

IEP (calculated)

7.662

GRAVY (calculated)

-0.142

Length

225 amino acids

Sequence
(BLAST)

001: MENNHQTQIQ ATKTSRFKRI CVFCGSSPGK KPSYQLAAIQ LGNQLVERNI DLVYGGGSVG LMGLVSQSVF NGGRHVLGVI PKTLMPREIT GESVGEVRAV
101: SGMHQRKAEM ARQADAFIAL PGGYGTLEEL LEVITWAQLG IHDKPVGLLN VDGYYNSLLS FIDKAVDEGF VTPSARHIII SAPTAQELMS KLEDYVPKHN
201: GVAPKLSWEM EQQLGYTTTK LEIAR

Best Arabidopsis Sequence Match ( AT2G28305.1 )
(BLAST)

001: MEIESKFKRI CVFCGSSAGN KVSYKDAAIE LGTELVSRNI DLVYGGGSIG LMGLISQAVF NGGRHVIGVI PKTLMPREIT GETVGEVKAV ADMHQRKAEM
101: AKHSDAFIAL PGGYGTLEEL LEVITWAQLG IHDKPVGLLN VEGYYNSLLS FIDKAVEEGF ISPTARHIIV SAPSAKELVK KLEDYVPRHE KVASKKSWEM
201: EQIGLSPTCE ISR

Arabidopsis Description

LOG1Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178VS96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.