Factsheet for TraesCS4A01G317900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G561400.1	Wheat	plastid	95.1	94.33
TraesCS5D01G568400.1	Wheat	plastid	85.31	88.94
TraesCS4A01G318100.1	Wheat	plastid	88.57	87.5
VIT_18s0001g14030.t01	Wine grape	mitochondrion	62.45	70.83
Os03t0857900-02	Rice	nucleus	70.61	70.33
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plastid	43.67	69.03
GSMUA_Achr8P19190_001	Banana	cytosol	62.86	68.75
GSMUA_Achr11P...	Banana	cytosol, plastid	60.82	68.04
KRH51716	Soybean	cytosol	60.41	66.97
PGSC0003DMT400009551	Potato	cytosol, mitochondrion, plastid	60.82	66.22
Solyc04g081290.2.1	Tomato	cytosol	60.82	66.22
CDY40411	Canola	cytosol	57.55	66.2
TraesCS4A01G054500.1	Wheat	mitochondrion	18.37	66.18
Bra017270.1-P	Field mustard	cytosol	57.14	65.73
CDY32063	Canola	cytosol	56.73	65.26
AT2G35990.1	Thale cress	cytosol	56.73	65.26
KRH05931	Soybean	cytosol	57.14	65.12
TraesCS1A01G156100.1	Wheat	mitochondrion	55.1	64.9
KRH61054	Soybean	cytosol	59.59	64.89
KRH17410	Soybean	cytosol	55.92	64.32
TraesCS4A01G413200.1	Wheat	mitochondrion	53.47	63.59
GSMUA_Achr2P00980_001	Banana	cytosol	63.27	62.75
CDX79649	Canola	cytosol	46.94	62.16
TraesCS2A01G380600.1	Wheat	cytosol	61.63	61.38
TraesCS3A01G211100.1	Wheat	cytosol	56.33	58.97
TraesCS1A01G362500.1	Wheat	cytosol	51.43	58.6
EER93059	Sorghum	cytosol	41.63	56.04
TraesCS5A01G347400.1	Wheat	cytosol	55.51	55.28
TraesCS5A01G347500.1	Wheat	cytosol	55.1	55.1
TraesCS3A01G251500.1	Wheat	plastid	51.02	54.59
TraesCS4A01G277200.1	Wheat	cytosol	48.98	54.05

Protein Annotations

EnsemblPlants:TraesCS4A01G317900.1	EnsemblPlantsGene:TraesCS4A01G317900	Gene3D:3.40.50.450	InterPro:LOG	InterPro:LOG_fam	PANTHER:PTHR31223
PANTHER:PTHR31223:SF27	PFAM:PF03641	SEG:seg	SUPFAM:SSF102405	TIGRFAMs:TIGR00730	MapMan:11.4.1.2

Description

No Description!

Coordinates

chr4A:-:607177428..607178300

Molecular Weight (calculated)

25852.1 Da

IEP (calculated)

7.129

GRAVY (calculated)

-0.049

Length

245 amino acids

Sequence
(BLAST)

001: MDRDPMEAPT STTAALVMPK TAPASDKKLP SRFRRVCVFC GSSAGRKAAY QAAAVQLGQQ LVERGIDLVY GGGSVGLMGL VSRAVHGGGG RVTGVVPRSV
101: LPRELIGETP GGEEVKAVSG MHQRKAEMAR RADAFVALPG GHGTLEELLE VITWAQLGIH DKPVGLLNVD GYYDSLLAFI DRAVEEGFVA PAARKIIVAA
201: PTPGELLAAL EEYVPAHHDA SSVKLSWESS VDTRTCSPSK PDISR

Best Arabidopsis Sequence Match ( AT2G28305.1 )
(BLAST)

001: MEIESKFKRI CVFCGSSAGN KVSYKDAAIE LGTELVSRNI DLVYGGGSIG LMGLISQAVF NGGRHVIGVI PKTLMPREIT GETVGEVKAV ADMHQRKAEM
101: AKHSDAFIAL PGGYGTLEEL LEVITWAQLG IHDKPVGLLN VEGYYNSLLS FIDKAVEEGF ISPTARHIIV SAPSAKELVK KLEDYVPRHE KVASKKSWEM
201: EQIGLSPTCE ISR

Arabidopsis Description

LOG1Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178VS96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.