Factsheet for VIT_18s0001g14030.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g081290.2.1	Tomato	cytosol	88.43	84.89
PGSC0003DMT400009551	Potato	cytosol, mitochondrion, plastid	88.43	84.89
KRH05931	Soybean	cytosol	84.26	84.65
KRH51716	Soybean	cytosol	86.11	84.16
KRH61054	Soybean	cytosol	85.65	82.22
KRH17410	Soybean	cytosol	81.02	82.16
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plastid	58.8	81.94
GSMUA_Achr11P...	Banana	cytosol, plastid	81.48	80.37
VIT_06s0004g02680.t01	Wine grape	cytosol, mitochondrion, nucleus	78.24	79.72
GSMUA_Achr8P19190_001	Banana	cytosol	81.48	78.57
VIT_08s0007g02480.t01	Wine grape	cytosol	78.24	78.24
VIT_08s0040g01780.t01	Wine grape	cytosol	78.7	77.98
VIT_18s0001g00210.t01	Wine grape	cytosol	74.07	73.06
GSMUA_Achr2P00980_001	Banana	cytosol	83.33	72.87
CDY40411	Canola	cytosol	69.44	70.42
AT2G35990.1	Thale cress	cytosol	68.98	69.95
Bra017270.1-P	Field mustard	cytosol	68.98	69.95
CDY32063	Canola	cytosol	68.06	69.01
VIT_03s0038g03420.t01	Wine grape	cytosol	73.15	69.0
CDX79649	Canola	cytosol	58.33	68.11
VIT_04s0008g01040.t01	Wine grape	cytosol	65.74	65.44
VIT_13s0064g00740.t01	Wine grape	cytosol	64.81	65.12
Os03t0857900-02	Rice	nucleus	73.61	64.63
VIT_06s0004g00590.t01	Wine grape	cytosol, mitochondrion	60.65	63.9
HORVU5Hr1G124750.1	Barley	cytosol	72.69	63.31
TraesCS5D01G568500.1	Wheat	cytosol	71.76	62.5
TraesCS4A01G318100.1	Wheat	plastid	71.76	62.5
VIT_14s0036g00590.t01	Wine grape	cytosol, extracellular	23.15	62.5
TraesCS4A01G317900.1	Wheat	plastid	70.83	62.45
TraesCS5B01G561300.1	Wheat	plastid	71.76	62.0
TraesCS5D01G568400.1	Wheat	plastid	66.67	61.28
TraesCS5B01G561400.1	Wheat	plastid	69.44	60.73
VIT_08s0007g08340.t01	Wine grape	cytosol	61.57	59.91
EER93059	Sorghum	cytosol	43.52	51.65

Protein Annotations

EntrezGene:100257475	wikigene:100257475	MapMan:11.4.1.2	Gene3D:3.40.50.450	ProteinID:CBI19842	ProteinID:CBI19842.3
UniProt:E0CPM6	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009691
GO:GO:0009987	GO:GO:0016787	EntrezGene:LOC100257475	wikigene:LOC100257475	InterPro:LOG	InterPro:LOG_fam
PFAM:PF03641	PANTHER:PTHR31223	PANTHER:PTHR31223:SF19	SUPFAM:SSF102405	TIGRFAMs:TIGR00730	UniParc:UPI00015C7747
ArrayExpress:VIT_18s0001g14030	EnsemblPlantsGene:VIT_18s0001g14030	EnsemblPlants:VIT_18s0001g14030.t01	RefSeq:XP_002276775	RefSeq:XP_002276775.1	:

Description

Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:E0CPM6]

Coordinates

chr18:+:12073618..12075722

Molecular Weight (calculated)

23434.5 Da

IEP (calculated)

6.516

GRAVY (calculated)

0.031

Length

216 amino acids

Sequence
(BLAST)

001: METLLPSRFK RVCVFCGSSP GKNPSYQLAA IQLANQLVER KIDLVYGGGS IGLMGLVSQA VYDGGRHVLG VIPKTLMPRE ITGETVGEVR AVSGMHQRKA
101: EMARQADAFI ALPGGYGTLE ELLEVITWAQ LGIHDKPVGL LNVDGYYNSL LSFIDKAVDE GFITAAARQI IVSAPTAQEL LCKLEEYVPK HSGVAPKLSW
201: EMEQQLGYAT KSDIAR

Best Arabidopsis Sequence Match ( AT2G37210.1 )
(BLAST)

001: MEIKGESMQK SKFRRICVFC GSSQGKKSSY QDAAVDLGNE LVSRNIDLVY GGGSIGLMGL VSQAVHDGGR HVIGIIPKTL MPRELTGETV GEVRAVADMH
101: QRKAEMAKHS DAFIALPGGY GTLEELLEVI TWAQLGIHDK PVGLLNVDGY YNSLLSFIDK AVEEGFISPT AREIIVSAPT AKELVKKLEE YAPCHERVAT
201: KLCWEMERIG YSSEE

Arabidopsis Description

Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:F4IQ18]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.