Factsheet for VIT_18s0001g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
endoplasmic reticulum 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g03420.t01	Wine grape	cytosol	89.04	85.15
VIT_14s0036g00590.t01	Wine grape	cytosol, extracellular	31.05	85.0
GSMUA_Achr2P03620_001	Banana	cytosol	79.45	79.45
GSMUA_AchrUn_...	Banana	cytosol	73.06	79.21
GSMUA_Achr1P07310_001	Banana	cytosol, mitochondrion	78.54	78.54
AT4G35190.1	Thale cress	cytosol	81.28	78.07
CDX76318	Canola	cytosol	80.37	77.19
Bra020803.1-P	Field mustard	cytosol	79.91	76.75
GSMUA_Achr7P04070_001	Banana	cytosol	74.89	76.28
CDX69118	Canola	cytosol	77.63	75.89
Bra011592.1-P	Field mustard	cytosol	80.82	75.64
CDY52642	Canola	cytosol	80.37	75.21
VIT_06s0004g02680.t01	Wine grape	cytosol, mitochondrion, nucleus	72.6	75.0
VIT_18s0001g14030.t01	Wine grape	mitochondrion	73.06	74.07
VIT_08s0040g01780.t01	Wine grape	cytosol	73.06	73.39
VIT_08s0007g02480.t01	Wine grape	cytosol	70.32	71.3
Zm00001d021450_P001	Maize	cytosol	74.89	70.69
CDY17522	Canola	cytosol	72.6	69.43
GSMUA_AchrUn_...	Banana	cytosol	78.08	69.23
EER97131	Sorghum	cytosol	73.52	68.51
OQU88832	Sorghum	cytosol, plastid	70.32	67.54
TraesCS5B01G348400.1	Wheat	cytosol	72.15	64.23
TraesCS5A01G347400.1	Wheat	cytosol	72.15	64.23
VIT_06s0004g00590.t01	Wine grape	cytosol, mitochondrion	59.36	63.41
TraesCS5B01G348300.1	Wheat	cytosol	71.69	62.8
TraesCS5D01G353600.1	Wheat	cytosol	70.78	62.25
Os09t0547500-01	Rice	cytosol, plastid	63.93	61.67
VIT_04s0008g01040.t01	Wine grape	cytosol	60.73	61.29
TraesCS5A01G347500.1	Wheat	cytosol	68.49	61.22
VIT_13s0064g00740.t01	Wine grape	cytosol	59.82	60.93
TraesCS5B01G348600.1	Wheat	cytosol	66.67	60.58
KRH32487	Soybean	cytosol	5.02	57.89
VIT_08s0007g08340.t01	Wine grape	cytosol	57.08	56.31

Protein Annotations

EntrezGene:100255687	wikigene:100255687	MapMan:11.4.1.2	Gene3D:3.40.50.450	EMBL:AM444260	ProteinID:CAN74076
ProteinID:CAN74076.1	ProteinID:CCB45389	ProteinID:CCB45389.1	UniProt:F6H0B7	EMBL:FN595227	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009987	GO:GO:0016787	EntrezGene:LOC100255687
wikigene:LOC100255687	InterPro:LOG	InterPro:LOG_fam	PFAM:PF03641	PANTHER:PTHR31223	PANTHER:PTHR31223:SF14
SUPFAM:SSF102405	TIGR:TC62588	TIGRFAMs:TIGR00730	UniParc:UPI00019856AF	ArrayExpress:VIT_18s0001g00210	EnsemblPlantsGene:VIT_18s0001g00210
EnsemblPlants:VIT_18s0001g00210.t01	RefSeq:XP_002285924	RefSeq:XP_002285924.2	RefSeq:XP_010664090.1	SEG:seg	:

Description

Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:F6H0B7]

Coordinates

chr18:-:1227119..1228794

Molecular Weight (calculated)

24307.5 Da

IEP (calculated)

6.624

GRAVY (calculated)

-0.104

Length

219 amino acids

Sequence
(BLAST)

001: MEKTEMVRSR FKRVCVFCGS STGKRNCYRD AAIELAQELV SRRLDLVYGG GSVGLMGLVS QEVHRGGGHV LGIIPKTLMC KEITGETVGE VRPVADMHQR
101: KAEMARHSDC FIALPGGYGT LEELLEVITW AQLGIHDKPV GLLNVDGYYN YLLTFIDKAV DDGFIKPSQR HIIVSAPNAR ELVQKLEEYV PVHDGVVAKA
201: RWEAEQLELN ASLQIDIAR

Best Arabidopsis Sequence Match ( AT4G35190.1 )
(BLAST)

001: MEIVKSRFKR VCVFCGSSSG KRECYSDAAT DLAQELVTRR LNLVYGGGSI GLMGLVSQAV HEAGGHVLGI IPRTLMDKEI TGETYGEVIA VADMHERKAE
101: MARHSDCFIA LPGGYGTLEE LLEVIAWAQL GIHDKPVGLL NVDGYYNYLL TFIDKAVDDG FIKPSQRHIF VSAPNAKELV QKLEAYKPVN DGVIAKSRWE
201: VEKKVQQPQQ QQQVVFCSNT SMQTEIAL

Arabidopsis Description

LOG5Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178UWQ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.