Factsheet for VIT_03s0038g03420.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0036g00590.t01	Wine grape	cytosol, extracellular	31.44	90.0
VIT_18s0001g00210.t01	Wine grape	cytosol	85.15	89.04
AT4G35190.1	Thale cress	cytosol	82.97	83.33
GSMUA_Achr2P03620_001	Banana	cytosol	79.48	83.11
CDX76318	Canola	cytosol	80.79	81.14
GSMUA_Achr1P07310_001	Banana	cytosol, mitochondrion	77.29	80.82
Bra020803.1-P	Field mustard	cytosol	80.35	80.7
GSMUA_AchrUn_...	Banana	cytosol	70.31	79.7
GSMUA_Achr7P04070_001	Banana	cytosol	74.24	79.07
Bra011592.1-P	Field mustard	cytosol	80.79	79.06
CDY52642	Canola	cytosol	80.35	78.63
CDX69118	Canola	cytosol	76.42	78.12
VIT_06s0004g02680.t01	Wine grape	cytosol, mitochondrion, nucleus	68.12	73.58
CDY17522	Canola	cytosol	73.36	73.36
VIT_18s0001g14030.t01	Wine grape	mitochondrion	69.0	73.15
VIT_08s0007g02480.t01	Wine grape	cytosol	69.0	73.15
VIT_08s0040g01780.t01	Wine grape	cytosol	68.56	72.02
GSMUA_AchrUn_...	Banana	cytosol	77.29	71.66
Zm00001d021450_P001	Maize	cytosol	72.49	71.55
EER97131	Sorghum	cytosol	72.49	70.64
OQU88832	Sorghum	cytosol, plastid	68.56	68.86
TraesCS5B01G348400.1	Wheat	cytosol	71.62	66.67
TraesCS5A01G347400.1	Wheat	cytosol	70.31	65.45
TraesCS5D01G353600.1	Wheat	cytosol	69.87	64.26
TraesCS5B01G348300.1	Wheat	cytosol	69.43	63.6
Os09t0547500-01	Rice	cytosol, plastid	62.88	63.44
TraesCS5B01G348600.1	Wheat	cytosol	66.38	63.07
VIT_04s0008g01040.t01	Wine grape	cytosol	59.39	62.67
VIT_06s0004g00590.t01	Wine grape	cytosol, mitochondrion	55.9	62.44
TraesCS5A01G347500.1	Wheat	cytosol	66.38	62.04
VIT_13s0064g00740.t01	Wine grape	cytosol	57.21	60.93
VIT_08s0007g08340.t01	Wine grape	cytosol	54.59	56.31
KRH32487	Soybean	cytosol	4.37	52.63

Protein Annotations

EntrezGene:100264122	wikigene:100264122	MapMan:11.4.1.2	Gene3D:3.40.50.450	EMBL:AM440285	ProteinID:CAN60746
ProteinID:CAN60746.1	ProteinID:CBI37781	ProteinID:CBI37781.3	UniProt:D7U4W2	EMBL:FN596508	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009987	GO:GO:0016787	EntrezGene:LOC100264122
wikigene:LOC100264122	InterPro:LOG	InterPro:LOG_fam	PFAM:PF03641	PANTHER:PTHR31223	PANTHER:PTHR31223:SF26
SUPFAM:SSF102405	TIGRFAMs:TIGR00730	UniParc:UPI00015C88AC	ArrayExpress:VIT_03s0038g03420	EnsemblPlantsGene:VIT_03s0038g03420	EnsemblPlants:VIT_03s0038g03420.t01
RefSeq:XP_002281839	RefSeq:XP_002281839.1	SEG:seg	:	:	:

Description

Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:D7U4W2]

Coordinates

chr3:-:2476022..2477403

Molecular Weight (calculated)

25364.6 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.150

Length

229 amino acids

Sequence
(BLAST)

001: MEEKVVYSRF KSVCVFCGSS TGKRNCYRDA AVELGQELVA RRLDLVYGGG SIGLMGLVSQ AVHRGGGHVL GIIPRTLMCK EITGETVGEV RPVADMHQRK
101: AEMARHSDCF IALPGGYGTL EELLEVITWA QLGIHDKPVG LLNVDGYYNY LLTFIDKAVD DGFIKPSQRH IIVSAPNAKE LVQKLEEYVP VHDGVIAKAR
201: WEVEQQQHQQ QQQQQVGFNA TTLQTEVAL

Best Arabidopsis Sequence Match ( AT4G35190.1 )
(BLAST)

001: MEIVKSRFKR VCVFCGSSSG KRECYSDAAT DLAQELVTRR LNLVYGGGSI GLMGLVSQAV HEAGGHVLGI IPRTLMDKEI TGETYGEVIA VADMHERKAE
101: MARHSDCFIA LPGGYGTLEE LLEVIAWAQL GIHDKPVGLL NVDGYYNYLL TFIDKAVDDG FIKPSQRHIF VSAPNAKELV QKLEAYKPVN DGVIAKSRWE
201: VEKKVQQPQQ QQQVVFCSNT SMQTEIAL

Arabidopsis Description

LOG5Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178UWQ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.