Factsheet for VIT_08s0040g01780.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91344	Canola	mitochondrion	80.73	88.44
CDX79722	Canola	cytosol	83.49	88.35
Solyc10g084150.1.1	Tomato	cytosol	88.53	87.73
KRG95991	Soybean	cytosol	88.07	87.67
KRH19875	Soybean	cytosol	88.07	87.67
Bra017202.1-P	Field mustard	cytosol	83.94	87.14
CDY46763	Canola	cytosol	82.11	86.89
Bra023107.1-P	Field mustard	cytosol	82.11	86.89
Solyc09g007830.2.1	Tomato	cytosol	86.7	86.7
PGSC0003DMT400027157	Potato	cytosol	87.16	86.36
KRH67693	Soybean	cytosol	86.7	86.3
PGSC0003DMT400055525	Potato	cytosol	86.24	86.24
VIT_06s0004g02680.t01	Wine grape	cytosol, mitochondrion, nucleus	83.49	85.85
CDX73553	Canola	cytosol	77.06	85.28
CDY52759	Canola	cytosol	83.94	85.12
GSMUA_Achr6P36490_001	Banana	cytosol	83.94	84.33
AT3G53450.1	Thale cress	cytosol	83.03	84.19
CDY30875	Canola	cytosol	82.11	83.26
Bra003135.1-P	Field mustard	cytosol	63.76	83.23
CDX76213	Canola	cytosol	76.61	82.67
Bra039788.1-P	Field mustard	cytosol	62.39	81.44
GSMUA_Achr1P09040_001	Banana	cytosol	81.19	81.19
Bra007000.1-P	Field mustard	cytosol	62.39	80.95
Zm00001d014016_P001	Maize	mitochondrion, nucleus	76.15	80.19
TraesCS1D01G154700.1	Wheat	mitochondrion	76.15	79.81
TraesCS1A01G156100.1	Wheat	mitochondrion	76.15	79.81
TraesCS1B01G173200.1	Wheat	mitochondrion	76.15	79.81
EER94070	Sorghum	mitochondrion	75.23	79.23
CDX74979	Canola	cytosol	83.03	79.04
VIT_18s0001g14030.t01	Wine grape	mitochondrion	77.98	78.7
AT2G37210.2	Thale cress	cytosol	84.4	76.99
TraesCS4D01G250300.1	Wheat	mitochondrion	23.85	76.47
VIT_08s0007g02480.t01	Wine grape	cytosol	75.69	76.39
CDX78180	Canola	cytosol	83.49	75.52
TraesCS4A01G413200.1	Wheat	mitochondrion	71.1	75.24
TraesCS4D01G310800.1	Wheat	mitochondrion	70.64	75.12
TraesCS4A01G054500.1	Wheat	mitochondrion	23.39	75.0
TraesCS4B01G250400.1	Wheat	mitochondrion	70.18	74.63
TraesCS4B01G313800.1	Wheat	mitochondrion	69.72	74.15
VIT_18s0001g00210.t01	Wine grape	cytosol	73.39	73.06
EES05457	Sorghum	cytosol	77.06	68.85
Zm00001d003013_P001	Maize	cytosol	78.44	68.67
VIT_03s0038g03420.t01	Wine grape	cytosol	72.02	68.56
Zm00001d029127_P001	Maize	mitochondrion	70.18	67.4
EES11120	Sorghum	cytosol	79.82	67.18
TraesCS2D01G376900.1	Wheat	cytosol	75.69	67.07
TraesCS2A01G380600.1	Wheat	cytosol	75.23	66.67
VIT_14s0036g00590.t01	Wine grape	cytosol, extracellular	24.31	66.25
Zm00001d025868_P002	Maize	cytosol	76.15	65.61
VIT_13s0064g00740.t01	Wine grape	cytosol	64.68	65.58
TraesCS4D01G250200.1	Wheat	mitochondrion	33.49	64.6
EER94862	Sorghum	mitochondrion, plastid	64.68	64.38
TraesCS1D01G003500.1	Wheat	cytosol	70.18	64.02
VIT_06s0004g00590.t01	Wine grape	cytosol, mitochondrion	60.09	63.9
HORVU2Hr1G089620.5	Barley	cytosol	76.61	63.5
VIT_04s0008g01040.t01	Wine grape	cytosol	62.39	62.67
VIT_08s0007g08340.t01	Wine grape	cytosol	62.84	61.71
TraesCS2B01G397600.2	Wheat	cytosol	75.23	58.57
HORVU4Hr1G079860.4	Barley	cytosol, nucleus	37.61	27.15

Protein Annotations

EntrezGene:100255182	wikigene:100255182	MapMan:11.4.1.2	Gene3D:3.40.50.450	ProteinID:CBI32740	ProteinID:CBI32740.3
UniProt:D7TQM0	EMBL:FN596008	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009691
GO:GO:0009987	GO:GO:0016787	EntrezGene:LOC100255182	wikigene:LOC100255182	InterPro:LOG	InterPro:LOG_fam
PFAM:PF03641	PANTHER:PTHR31223	PANTHER:PTHR31223:SF17	SUPFAM:SSF102405	TIGRFAMs:TIGR00730	UniParc:UPI00015CABA0
ArrayExpress:VIT_08s0040g01780	EnsemblPlantsGene:VIT_08s0040g01780	EnsemblPlants:VIT_08s0040g01780.t01	RefSeq:XP_002276279	RefSeq:XP_002276279.2	:

Description

Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:D7TQM0]

Coordinates

chr8:+:12902284..12906851

Molecular Weight (calculated)

23775.5 Da

IEP (calculated)

4.976

GRAVY (calculated)

-0.083

Length

218 amino acids

Sequence
(BLAST)

001: MEIEAEVEQS KFKRICVFCG SSQGKKTSYQ DAAIQLGKEL VSRNIDLVYG GGSIGLMGLV SQAVHNGGRH VIGVIPKTLM PRELTGVTVG EVKAVADMHQ
101: RKAEMAKHSD AFIALPGGYG TLEELLEVIA WAQLGIHDKP VGLLNVDGYY NSLLSFIDKA VEEGFISPSA RHIIVSAPTA EELVKKLEEY VPSHQGVASK
201: LSWEMEQLDY PEEYDISS

Best Arabidopsis Sequence Match ( AT2G37210.1 )
(BLAST)

001: MEIKGESMQK SKFRRICVFC GSSQGKKSSY QDAAVDLGNE LVSRNIDLVY GGGSIGLMGL VSQAVHDGGR HVIGIIPKTL MPRELTGETV GEVRAVADMH
101: QRKAEMAKHS DAFIALPGGY GTLEELLEVI TWAQLGIHDK PVGLLNVDGY YNSLLSFIDK AVEEGFISPT AREIIVSAPT AKELVKKLEE YAPCHERVAT
201: KLCWEMERIG YSSEE

Arabidopsis Description

Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:F4IQ18]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.