Factsheet for TraesCS4D01G250200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G250400.1	Wheat	mitochondrion	84.07	46.34
TraesCS4D01G310800.1	Wheat	mitochondrion	80.53	44.39
Os03t0109300-01	Rice	mitochondrion	74.34	39.81
TraesCS1D01G154700.1	Wheat	mitochondrion	69.91	37.98
KRH32483	Soybean	cytosol, golgi, mitochondrion	58.41	36.46
KRH15578	Soybean	cytosol	23.89	35.53
Solyc09g007830.2.1	Tomato	cytosol	67.26	34.86
PGSC0003DMT400055525	Potato	cytosol	67.26	34.86
EER94862	Sorghum	mitochondrion, plastid	67.26	34.7
VIT_06s0004g02680.t01	Wine grape	cytosol, mitochondrion, nucleus	64.6	34.43
CDY62895	Canola	cytosol	59.29	33.84
AT5G03270.1	Thale cress	cytosol	60.18	33.83
GSMUA_Achr6P36490_001	Banana	cytosol	64.6	33.64
CDY44352	Canola	cytosol	60.18	33.5
Bra023107.1-P	Field mustard	cytosol	61.06	33.5
VIT_08s0040g01780.t01	Wine grape	cytosol	64.6	33.49
Zm00001d029127_P001	Maize	mitochondrion	67.26	33.48
Bra034399.1-P	Field mustard	cytosol	62.83	33.33
Bra017202.1-P	Field mustard	cytosol	61.95	33.33
Bra011962.1-P	Field mustard	cytosol	62.83	33.33
Solyc10g084150.1.1	Tomato	cytosol	64.6	33.18
PGSC0003DMT400027157	Potato	cytosol	63.72	32.73
GSMUA_Achr1P09040_001	Banana	cytosol	62.83	32.57
KRG95991	Soybean	cytosol	61.95	31.96
KRH67693	Soybean	cytosol	61.95	31.96
KRH22873	Soybean	cytosol	58.41	31.58
KRH26448	Soybean	cytosol	58.41	31.58
KRH19875	Soybean	cytosol	61.06	31.51
Solyc06g075090.2.1	Tomato	cytosol	53.1	31.41
KRH29895	Soybean	cytosol	61.06	31.36
PGSC0003DMT400020890	Potato	cytosol	61.95	30.7
Solyc11g069570.1.1	Tomato	cytosol	62.83	30.34
KRH25030	Soybean	cytosol	61.95	30.04
TraesCS5D01G568500.1	Wheat	cytosol	61.06	27.82
TraesCS2D01G376900.1	Wheat	cytosol	59.29	27.24
TraesCS5D01G568400.1	Wheat	plastid	56.64	27.23
TraesCS1D01G367400.1	Wheat	cytosol	50.44	26.51
TraesCS3D01G251900.1	Wheat	cytosol	52.21	26.11
TraesCS1D01G003500.1	Wheat	cytosol	53.98	25.52
TraesCS4D01G033800.1	Wheat	cytosol	50.44	25.33
TraesCS3D01G213900.1	Wheat	cytosol	53.98	25.31
TraesCS5D01G353600.1	Wheat	cytosol	55.75	25.3
TraesCS1D01G444500.1	Wheat	cytosol	61.06	25.27
Bra003135.1-P	Field mustard	cytosol	30.97	20.96
Bra039788.1-P	Field mustard	cytosol	30.97	20.96
Bra007000.1-P	Field mustard	cytosol	30.97	20.83
TraesCS4D01G250300.1	Wheat	mitochondrion	6.19	10.29
TraesCS4A01G054500.1	Wheat	mitochondrion	6.19	10.29
KRH15614	Soybean	cytosol, extracellular, plastid	5.31	8.7
KRH07771	Soybean	cytosol	5.31	8.22

Protein Annotations

EnsemblPlants:TraesCS4D01G250200.1	EnsemblPlantsGene:TraesCS4D01G250200	Gene3D:3.40.50.450	InterPro:LOG_fam	PANTHER:PTHR31223	PANTHER:PTHR31223:SF40
PFAM:PF03641	SUPFAM:SSF102405	MapMan:11.4.1.2	:	:	:

Description

No Description!

Coordinates

chr4D:+:419137189..419137730

Molecular Weight (calculated)

12850.5 Da

IEP (calculated)

5.488

GRAVY (calculated)

-0.056

Length

113 amino acids

Sequence
(BLAST)

001: MHSARAKLYV LSNMHLTHSG GYGTLEELLE VITWAQLGIH HKPVGLLNVE GYYDSLLTFI DQAVEEGFIN PAARRIIVSA PTAHKLMEKL EKYVPYYDMV
101: ATGLDWETDR LEF

Best Arabidopsis Sequence Match ( AT2G37210.1 )
(BLAST)

001: MEIKGESMQK SKFRRICVFC GSSQGKKSSY QDAAVDLGNE LVSRNIDLVY GGGSIGLMGL VSQAVHDGGR HVIGIIPKTL MPRELTGETV GEVRAVADMH
101: QRKAEMAKHS DAFIALPGGY GTLEELLEVI TWAQLGIHDK PVGLLNVDGY YNSLLSFIDK AVEEGFISPT AREIIVSAPT AKELVKKLEE YAPCHERVAT
201: KLCWEMERIG YSSEE

Arabidopsis Description

Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:F4IQ18]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.