Factsheet for TraesCS1D01G444500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G471300.1	Wheat	cytosol, plastid	91.21	92.91
HORVU1Hr1G094290.7	Barley	plastid	83.52	79.44
Os05t0591600-01	Rice	cytosol	76.92	78.95
KXG22670	Sorghum	plastid	74.36	78.08
TraesCS3D01G213900.1	Wheat	cytosol	68.13	77.18
Zm00001d039174_P001	Maize	plastid	73.26	75.47
KRH32819	Soybean	cytosol	57.51	73.36
KRH72214	Soybean	cytosol	57.14	72.9
VIT_08s0007g02480.t01	Wine grape	cytosol	56.78	71.76
GSMUA_Achr8P04060_001	Banana	cytosol	59.34	71.68
KRG96247	Soybean	cytosol	55.31	70.89
KRH67989	Soybean	cytosol	55.31	70.89
GSMUA_Achr2P08380_001	Banana	cytosol	59.34	70.74
CDY04985	Canola	cytosol	53.85	68.37
TraesCS1D01G154700.1	Wheat	mitochondrion	51.65	67.79
AT5G06300.1	Thale cress	cytosol	53.48	67.28
Solyc10g082020.1.1	Tomato	cytosol	53.11	66.82
TraesCS4D01G250300.1	Wheat	mitochondrion	16.48	66.18
TraesCS4D01G310800.1	Wheat	mitochondrion	49.45	65.85
Solyc01g007270.1.1	Tomato	cytosol	16.85	65.71
PGSC0003DMT400042349	Potato	cytosol	52.01	65.14
PGSC0003DMT400072345	Potato	cytosol	53.11	63.6
GSMUA_Achr6P35930_001	Banana	cytosol	51.65	63.23
TraesCS4D01G250200.1	Wheat	mitochondrion	25.27	61.06
TraesCS5D01G568400.1	Wheat	plastid	51.65	60.0
TraesCS5D01G353600.1	Wheat	cytosol	54.21	59.44
TraesCS2D01G376900.1	Wheat	cytosol	53.48	59.35
TraesCS5D01G568500.1	Wheat	cytosol	52.01	57.26
TraesCS1D01G367400.1	Wheat	cytosol	45.05	57.21
TraesCS3D01G251900.1	Wheat	cytosol	46.89	56.64
TraesCS1D01G003500.1	Wheat	cytosol	49.08	56.07
TraesCS4D01G033800.1	Wheat	cytosol	41.76	50.67
Bra028735.1-P	Field mustard	cytosol	14.29	30.95

Protein Annotations

EnsemblPlants:TraesCS1D01G444500.1	EnsemblPlantsGene:TraesCS1D01G444500	Gene3D:3.40.50.450	InterPro:LOG	InterPro:LOG_fam	PANTHER:PTHR31223
PANTHER:PTHR31223:SF13	PFAM:PF03641	SEG:seg	SUPFAM:SSF102405	TIGRFAMs:TIGR00730	MapMan:11.4.1.2

Description

No Description!

Coordinates

chr1D:+:487807747..487811665

Molecular Weight (calculated)

28818.8 Da

IEP (calculated)

4.908

GRAVY (calculated)

0.067

Length

273 amino acids

Sequence
(BLAST)

001: MSITAAAVAV GPPAFAIGAA PAAEMEMKPA LAPPEPSRGV GGIGEDSDGV RVAAEGRASR FRRICVYCGS AKGRKASYQD AAVNLGKEMV ERGIDLVYGG
101: GSIGLMGLVS HAVHAGGRHV IGIIPRSLMP REVTGDPVGE VRAVSGMHER KAEMARFADA FIALPGGYGT LEELLEVITW AQLGIHKKPV GLLNVDGFYD
201: PLLSFIDVAV NEGFITQEAR QIIISAPTAK ELVMKLEDYV PEYEVGLVWE DQGQKPSNSL VPEPLETPAI TSS

Best Arabidopsis Sequence Match ( AT2G28305.1 )
(BLAST)

001: MEIESKFKRI CVFCGSSAGN KVSYKDAAIE LGTELVSRNI DLVYGGGSIG LMGLISQAVF NGGRHVIGVI PKTLMPREIT GETVGEVKAV ADMHQRKAEM
101: AKHSDAFIAL PGGYGTLEEL LEVITWAQLG IHDKPVGLLN VEGYYNSLLS FIDKAVEEGF ISPTARHIIV SAPSAKELVK KLEDYVPRHE KVASKKSWEM
201: EQIGLSPTCE ISR

Arabidopsis Description

LOG1Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178VS96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.