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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • cytosol 2
  • nucleus 2
  • plastid 1
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:cytosol
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400081828 Potato mitochondrion 97.55 97.07
VIT_06s0004g00590.t01 Wine grape cytosol, mitochondrion 78.92 78.54
Solyc08g062820.2.1 Tomato cytosol 71.08 68.08
Solyc01g007270.1.1 Tomato cytosol 22.06 64.29
Solyc06g075090.2.1 Tomato cytosol 59.31 63.35
Solyc09g007830.2.1 Tomato cytosol 63.73 59.63
Solyc10g084150.1.1 Tomato cytosol 64.22 59.55
Solyc04g081290.2.1 Tomato cytosol 63.73 57.78
Solyc10g082020.1.1 Tomato cytosol 60.29 56.68
Solyc11g069570.1.1 Tomato cytosol 63.73 55.56
Protein Annotations
MapMan:11.4.1.2Gene3D:3.40.50.450GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009691
GO:GO:0009987GO:GO:0016787UniProt:K4ASD4InterPro:LOGInterPro:LOG_famPFAM:PF03641
PANTHER:PTHR31223PANTHER:PTHR31223:SF15SUPFAM:SSF102405EnsemblPlantsGene:Solyc01g005680.2EnsemblPlants:Solyc01g005680.2.1TIGRFAMs:TIGR00730
UniParc:UPI0002761CD7:::::
Description
Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:K4ASD4]
Coordinates
chr1:+:472491..477313
Molecular Weight (calculated)
22072.7 Da
IEP (calculated)
4.678
GRAVY (calculated)
0.097
Length
204 amino acids
Sequence
(BLAST)
001: MGNFKKICVF CGSNSGYRKI FSDAALDLGR ELVEKKIDLV YGGGSIGLMG LVSQAVYDGG CNVLGIIPRA LVSVEISGHA VGEVLIVSDM HERKAEMASR
101: ADAFIALPGG YGTMEELLEV ITWSQLGIHE KPVGLLNIDG YYDCLLGLFD KGVEEGFIKP SARNIIISAT SPKELLEKME EYVPIHNQVA PSRSWNTDES
201: VTTS
Best Arabidopsis Sequence Match ( AT5G11950.1 )
(BLAST)
001: MEDNQRSRFR KICVFCGSHS GHREVFSDAA IELGNELVKR KIDLVYGGGS VGLMGLISRR VYEGGLHVLG IIPKALMPIE ISGETVGDVR VVADMHERKA
101: AMAQEAEAFI ALPGGYGTME ELLEMITWSQ LGIHKKTVGL LNVDGYYNNL LALFDTGVEE GFIKPGARNI VVSAPTAKEL MEKMEEYTPS HMHVASHESW
201: KVEELGDYPG QENKPQ
Arabidopsis Description
LOG8Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178UJ28]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.