Factsheet for GSMUA_Achr6P25180_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	39.14	46.23
KXG22223	Sorghum	nucleus	45.69	45.93
Zm00001d043074_P001	Maize	cytosol	42.41	44.48
TraesCS3A01G342200.1	Wheat	nucleus	42.24	44.38
TraesCS3D01G336100.1	Wheat	nucleus	42.07	44.2
TraesCS3B01G374300.1	Wheat	nucleus	42.07	44.2
Zm00001d012515_P002	Maize	nucleus	41.55	43.74
HORVU3Hr1G080730.1	Barley	nucleus	41.03	43.27
Zm00001d038489_P001	Maize	nucleus	42.59	42.73
Zm00001d010620_P001	Maize	nucleus	42.24	42.46
EES01661	Sorghum	nucleus	40.69	42.45
Os05t0480600-01	Rice	cytosol	42.93	42.2
VIT_08s0056g00640.t01	Wine grape	nucleus	40.0	40.7
TraesCS1A01G302000.1	Wheat	nucleus	42.93	40.69
KRH00491	Soybean	mitochondrion, nucleus	40.52	40.17
GSMUA_Achr3P09700_001	Banana	cytosol	33.1	40.17
Os01t0819000-02	Rice	nucleus	40.0	40.07
AT3G08670.1	Thale cress	mitochondrion	38.79	39.68
PGSC0003DMT400005965	Potato	nucleus	38.62	39.65
Solyc06g054690.2.1	Tomato	nucleus	38.45	39.54
TraesCS1B01G311900.2	Wheat	nucleus	42.41	38.62
KRH40665	Soybean	nucleus	38.62	38.23
CDX73938	Canola	nucleus	34.83	37.41
CDY00658	Canola	nucleus	34.83	37.41
Bra001348.1-P	Field mustard	nucleus	34.66	37.15
Bra029708.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	36.21	37.1
CDY35995	Canola	nucleus	36.03	34.43
CDY27987	Canola	nucleus	35.52	33.83
KRH64866	Soybean	cytosol	24.83	31.72
KRH09557	Soybean	mitochondrion	26.72	31.31
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	21.72	24.75
GSMUA_Achr8P02330_001	Banana	cytosol	23.1	22.41
GSMUA_Achr10P...	Banana	nucleus	21.72	22.38
GSMUA_Achr10P...	Banana	mitochondrion	8.97	19.12
GSMUA_Achr5P28870_001	Banana	cytosol	22.93	18.81
GSMUA_Achr2P20960_001	Banana	nucleus	18.28	10.63
GSMUA_Achr6P12380_001	Banana	nucleus	15.34	7.52
GSMUA_Achr3P17040_001	Banana	nucleus	13.79	7.42

Protein Annotations

EnsemblPlants:GSMUA_Achr6P25180_001	EnsemblPlants:GSMUA_Achr6T25180_001	EnsemblPlantsGene:GSMUA_Achr6G25180_001	PANTHER:PTHR31949	PANTHER:PTHR31949:SF2	SEG:seg
UniParc:UPI0002951ACA	UniProt:M0TA14	MapMan:35.2	:	:	:

Description

transposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G25180_001]

Coordinates

chr6:-:26228437..26233413

Molecular Weight (calculated)

61970.4 Da

IEP (calculated)

11.370

GRAVY (calculated)

-0.683

Length

580 amino acids

Sequence
(BLAST)

001: MSRISEDSLI SSRNSPAASL LLRRGRSLVS GGRVSAEGDG LELDLFSRSR IAGPPIGSAS GSDVQEGSNK FVGEPKIGRI GMDDLLDADI GKHDYDWLLT
101: PPGTPQAAPL VSSESQLPTV APKRSSTARS SSTTRASRLS VSQTENGHSV RPARSSSVTR ASVSSSYVSN NNRTSVLNTS SASVTSRPST PSKRPVTPSA
201: AKSSTPVSRP VPIRSSTPQK TRPTSVSPGL KSEPSQNSRP ATPTSRSQIS TSVNSNSSSI VARSTSRPST PTRQPIARTT TPTSTVGRSP SVGRLPVSNA
301: NTVSSSRPSS PNPRPRAPVR PINLPDFPND VPPNLRTKLP ERPLSAGRAR PGMALTIRAS SNSEPVVPSV TNRRLSLPII SRSKFPENPP KAPLHSNGHY
401: ANSSDNQKPV GSEAGPRRNI KPVSSTENTG FGRTISKKSL DMAIKHMDIR QSLGGIRGAS IFPHSIRSAV PKGRTARVSE TIVPVTNDEI LAENGSYDGT
501: SGDFNGGVLY NMNTSTKSPD RENLMRRERM NDIDLYGSYR YDAMLTKEDL KNASWLLSAD DKSDQGSLFD HRFEPLPEPF

Best Arabidopsis Sequence Match ( AT3G08670.1 )
(BLAST)

001: MNRNLRESLA GGRNIPAISQ FRRGNNNNSN NISQNGFSRD SDENLDLFSK IRRSFPLASS DELPDVSAKL GRLSVGSKIA PKGKDDLLSS AEGGKNDYDW
101: LLTPPGTPLG NDSHSSLAAP KIASSARASS ASKASRLSVS QSESGYHSSR PARSSSVTRP SISTSQYSSF TSGRSPSSIL NTSSASVSSY IRPSSPSSRS
201: SSSARPSTPT RTSSASRSST PSRIRPGSSS SSMDKARPSL SSRPSTPTSR PQLSASSPNI IASRPNSRPS TPTRRSPSST SLSATSGPTI SGGRAASNGR
301: TGPSLSRPSS PGPRVRNTPQ QPIVLADFPL DTPPNLRTSL PDRPISAGRS RPVGGSSMAK ASPEPKGPIT RRNSSPIVTR GRLTETQGKG RFGGNGQHLT
401: DAPEPRRISN VSDITSRRTV KTSTTVTDNN NGLGRSFSKS SLDMAIRHMD IRNGKTNGCA LSTTTLFPQS IRPASSKIQP IRSGNNHSDS ISSNGTENGN
501: EANEGRRLMG KLSDMDMYES SRYDALLLKE DVKNTNWLHS IDDRSSDHGL MFDNGGFELL PEPFAPL

Arabidopsis Description

At3g08670 [Source:UniProtKB/TrEMBL;Acc:Q9C9Y9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.