Factsheet for GSMUA_Achr8P02330_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	63.38	74.46
GSMUA_Achr10P...	Banana	nucleus	65.72	69.8
VIT_13s0067g00570.t01	Wine grape	nucleus	54.85	60.18
PGSC0003DMT400069903	Potato	cytosol, nucleus, plastid	15.72	58.75
PGSC0003DMT400059907	Potato	plastid	16.56	56.57
Os01t0141900-01	Rice	nucleus	55.85	55.12
EES02509	Sorghum	nucleus	54.85	54.67
Zm00001d039901_P003	Maize	nucleus	54.68	54.5
VIT_08s0007g02160.t01	Wine grape	nucleus	49.16	53.65
KRH49356	Soybean	nucleus	44.15	51.26
KRH00210	Soybean	nucleus	44.15	51.26
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	51.67	50.57
KRG97756	Soybean	nucleus	49.67	49.42
TraesCS3D01G054400.1	Wheat	cytosol	51.51	48.81
AT2G40070.1	Thale cress	nucleus	49.16	48.43
Bra004992.1-P	Field mustard	nucleus	47.66	48.39
GSMUA_Achr5P28870_001	Banana	cytosol	57.19	48.37
TraesCS3B01G067400.1	Wheat	nucleus	51.0	48.26
CDY07628	Canola	nucleus	48.83	47.95
Solyc03g096090.2.1	Tomato	plastid	38.96	47.94
Bra000164.1-P	Field mustard	nucleus	48.66	47.78
CDY60338	Canola	nucleus	48.66	47.7
CDX74811	Canola	nucleus	46.66	47.45
CDY20509	Canola	cytosol	47.66	47.42
KRH31123	Soybean	nucleus	48.16	46.53
TraesCS3A01G055100.2	Wheat	cytosol	52.01	45.27
PGSC0003DMT400021880	Potato	nucleus	39.46	44.11
PGSC0003DMT400069902	Potato	cytosol	11.71	44.03
PGSC0003DMT400031157	Potato	nucleus	11.37	43.87
KRH14961	Soybean	nucleus	48.49	43.41
Solyc09g014490.2.1	Tomato	nucleus	38.63	43.18
PGSC0003DMT400031154	Potato	nucleus	30.1	42.96
AT3G09000.1	Thale cress	nucleus	37.29	41.22
KRH73177	Soybean	nucleus	47.32	40.9
Bra034046.1-P	Field mustard	nucleus	34.78	40.39
CDY53090	Canola	nucleus	34.11	40.0
CDY22176	Canola	nucleus	33.95	39.34
Bra029739.1-P	Field mustard	nucleus	34.45	38.94
CDY44674	Canola	nucleus	34.28	38.75
AT2G38160.3	Thale cress	nucleus	19.4	36.25
Bra028894.1-P	Field mustard	nucleus	30.43	35.97
CDY55901	Canola	nucleus	30.43	35.97
AT5G01280.1	Thale cress	mitochondrion, nucleus	28.93	35.74
CDY48118	Canola	nucleus	30.1	35.57
CDX93325	Canola	nucleus	18.39	33.13
GSMUA_Achr10P...	Banana	mitochondrion	13.04	28.68
Bra017135.1-P	Field mustard	nucleus	17.39	27.23
CDY18403	Canola	nucleus	17.22	26.96
GSMUA_Achr3P09700_001	Banana	cytosol	18.9	23.64
GSMUA_Achr6P25180_001	Banana	cytosol	22.41	23.1
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	14.55	17.72
GSMUA_Achr2P20960_001	Banana	nucleus	18.39	11.03
GSMUA_Achr3P17040_001	Banana	nucleus	18.73	10.39
GSMUA_Achr6P12380_001	Banana	nucleus	18.56	9.38

Protein Annotations

EnsemblPlants:GSMUA_Achr8P02330_001	EnsemblPlants:GSMUA_Achr8T02330_001	EnsemblPlantsGene:GSMUA_Achr8G02330_001	PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	SEG:seg
UniParc:UPI000296EE37	UniProt:M0TLY5	MapMan:35.2	:	:	:

Description

retrotransposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G02330_001]

Coordinates

chr8:+:1710021..1718539

Molecular Weight (calculated)

63610.0 Da

IEP (calculated)

11.631

GRAVY (calculated)

-0.630

Length

598 amino acids

Sequence
(BLAST)

001: MNRSFRAGAA TGRTVTKEAD EELALFLEMR KLEKERNNLL LHGAGELDPP LGAKPGTAPI FKIASSAPAR KAGIDDFLNS DSEKNDYDWL LTPPGTPLFP
101: SLDTESKRSP AGSTGTPKAR PTVLKSRVSY VNHCPFSHSS FYSFHDRALN ISLRFLHVLE TANSTYITII YQASQFWMCH ELMKSSVQIL GNPVSTHSIR
201: SKGCARIIYP SRSTLAPRQP ASSSGLNSAI GTRRPSSSGG TTHSSSRPAT PTGRPTLPAA SKPTRPSTPP SRTTLPSKSL APPRSSTPVR SSTPTSRPSL
301: PVVSKPSSRS ATPTRRPSVP STVSSSSAPS SRSSSVTKSG PTISKSSVPP HGSSPTIKPR PLKPTDIPGF SLDAPPNLRT SLPERPSSAS RGRPGAPSSR
401: SSSVEPGPNI RPRRQSCSPS RGRVPNGSVH KGTSVPPSSR PQASGSDNVN PVIIGNKMVE RIVNMRRLAP PKQDDQRSSH NNLSGKSSLS PDGAGFGRTL
501: SKKSLDMALR HMDIRRSVPN SLRPLMANIP ASSVYSVRSG ATRSRTVSVS DSPLATSSTV SSEQSVNNNM LGLDGSEIED EITSDKRGRC PPAVPNTR

Best Arabidopsis Sequence Match ( AT2G40070.1 )
(BLAST)

001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR

Arabidopsis Description

At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.