Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400021880 | Potato | nucleus | 94.21 | 94.21 |
| GSMUA_Achr6P33750_001 | Banana | cytosol, mitochondrion | 42.24 | 44.4 |
| VIT_08s0007g02160.t01 | Wine grape | nucleus | 44.11 | 43.07 |
| KRH00210 | Soybean | nucleus | 40.37 | 41.94 |
| KRH49356 | Soybean | nucleus | 39.63 | 41.16 |
| GSMUA_Achr10P... | Banana | nucleus | 40.93 | 38.9 |
| GSMUA_Achr8P02330_001 | Banana | cytosol | 43.18 | 38.63 |
| EES02509 | Sorghum | nucleus | 42.43 | 37.83 |
| Zm00001d039901_P003 | Maize | nucleus | 42.24 | 37.67 |
| Os01t0141900-01 | Rice | nucleus | 42.43 | 37.46 |
| Solyc03g096090.2.1 | Tomato | plastid | 32.71 | 36.01 |
| CDX93325 | Canola | nucleus | 21.68 | 34.94 |
| AT2G38160.3 | Thale cress | nucleus | 20.75 | 34.69 |
| HORVU3Hr1G010470.4 | Barley | cytosol, nucleus | 39.44 | 34.53 |
| CDY53090 | Canola | nucleus | 32.15 | 33.73 |
| TraesCS3D01G054400.1 | Wheat | cytosol | 39.63 | 33.6 |
| TraesCS3B01G067400.1 | Wheat | nucleus | 39.63 | 33.54 |
| CDY44674 | Canola | nucleus | 33.08 | 33.46 |
| Bra029739.1-P | Field mustard | nucleus | 33.08 | 33.46 |
| Bra034046.1-P | Field mustard | nucleus | 31.4 | 32.62 |
| CDY22176 | Canola | nucleus | 31.4 | 32.56 |
| AT3G09000.1 | Thale cress | nucleus | 32.71 | 32.35 |
| CDY55901 | Canola | nucleus | 29.53 | 31.23 |
| CDY48118 | Canola | nucleus | 29.53 | 31.23 |
| Bra028894.1-P | Field mustard | nucleus | 29.53 | 31.23 |
| TraesCS3A01G055100.2 | Wheat | cytosol | 39.63 | 30.86 |
| AT5G01280.1 | Thale cress | mitochondrion, nucleus | 25.61 | 28.31 |
| GSMUA_Achr5P28870_001 | Banana | cytosol | 36.45 | 27.58 |
| CDY18403 | Canola | nucleus | 19.07 | 26.7 |
| Bra017135.1-P | Field mustard | nucleus | 19.07 | 26.7 |
| Solyc06g054690.2.1 | Tomato | nucleus | 24.11 | 22.87 |
| Solyc05g014640.2.1 | Tomato | nucleus | 17.2 | 8.13 |
Protein Annotations
| EnsemblPlants:Solyc09g014490.2.1 | EnsemblPlantsGene:Solyc09g014490.2 | ncoils:Coil | PANTHER:PTHR31949 | PANTHER:PTHR31949:SF1 | SEG:seg |
| UniParc:UPI000276B915 | UniProt:K4CRS6 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr9:-:6111216..6115608
Molecular Weight (calculated)
56835.0 Da
IEP (calculated)
10.854
GRAVY (calculated)
-0.819
Length
535 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSVQCRPQ ERTLGMVMKE VDEDLAMFLE MRRSEKEMND QLAKCDSEEL NQQLGSEVDF SLLSNGTLTK PANQDYLLNS ESDKNDYDWL LSPPQTPSNS
101: LPEVEEQNIP VFQIVTNSSS TGQDCKIKVD SSTVAPEPKI SIEQDIVQPA NSLEGLHSTG EPDMSRSKSS SAGNGRPSSS GGKKATSTRS STPTGRPRSS
201: SSKPSRASTP TSRATLPSAK PVASTARSST PTRAAPRSST PNGRPSKPAA SKSASRSATP TRRPSAASSI PIVSVSGSRS SSSTKTGSAT LNKTVPSRGT
301: SPTVKSRPLK PLETPSLSRD SSVISKTVVP KRPASASRGR PTAPGARHST ANGKPRRKSS SPSRGRATTA AILSNATALL SKSRGYGIEK DDVNPVLIGT
401: QMVERVVNMR KLAPPKQDDN VSHENSSKKS LSRENSGFGR SFSKKSLDMA LRHMDIRRSV NGTLRPVLTR VSASSANGVR SSSTKNKTGS VSDSPLATSS
501: NASSEPSMNN SSNNINWSEP EDDNFGCERE LSSPR
101: LPEVEEQNIP VFQIVTNSSS TGQDCKIKVD SSTVAPEPKI SIEQDIVQPA NSLEGLHSTG EPDMSRSKSS SAGNGRPSSS GGKKATSTRS STPTGRPRSS
201: SSKPSRASTP TSRATLPSAK PVASTARSST PTRAAPRSST PNGRPSKPAA SKSASRSATP TRRPSAASSI PIVSVSGSRS SSSTKTGSAT LNKTVPSRGT
301: SPTVKSRPLK PLETPSLSRD SSVISKTVVP KRPASASRGR PTAPGARHST ANGKPRRKSS SPSRGRATTA AILSNATALL SKSRGYGIEK DDVNPVLIGT
401: QMVERVVNMR KLAPPKQDDN VSHENSSKKS LSRENSGFGR SFSKKSLDMA LRHMDIRRSV NGTLRPVLTR VSASSANGVR SSSTKNKTGS VSDSPLATSS
501: NASSEPSMNN SSNNINWSEP EDDNFGCERE LSSPR
001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR
Arabidopsis Description
At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.