Factsheet for GSMUA_Achr5P28870_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	42.57	59.14
GSMUA_Achr8P02330_001	Banana	cytosol	48.37	57.19
GSMUA_Achr10P...	Banana	nucleus	42.72	53.64
VIT_13s0067g00570.t01	Wine grape	nucleus	38.76	50.28
VIT_08s0007g02160.t01	Wine grape	nucleus	36.21	46.72
PGSC0003DMT400069903	Potato	cytosol, nucleus, plastid	10.47	46.25
Os01t0141900-01	Rice	nucleus	39.6	46.2
EES02509	Sorghum	nucleus	38.47	45.33
Zm00001d039901_P003	Maize	nucleus	38.33	45.17
KRH00210	Soybean	nucleus	31.97	43.88
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	37.77	43.7
PGSC0003DMT400059907	Potato	plastid	10.75	43.43
KRG97756	Soybean	nucleus	36.35	42.76
Bra004992.1-P	Field mustard	nucleus	35.5	42.61
TraesCS3D01G054400.1	Wheat	cytosol	37.91	42.47
TraesCS3B01G067400.1	Wheat	nucleus	37.62	42.09
AT2G40070.1	Thale cress	nucleus	36.07	42.01
CDX74811	Canola	nucleus	34.94	42.01
KRH49356	Soybean	nucleus	30.41	41.75
Solyc03g096090.2.1	Tomato	plastid	28.57	41.56
CDY07628	Canola	nucleus	35.78	41.54
CDY20509	Canola	cytosol	35.22	41.43
Bra000164.1-P	Field mustard	nucleus	35.64	41.38
CDY60338	Canola	nucleus	35.5	41.15
KRH31123	Soybean	nucleus	35.22	40.23
PGSC0003DMT400069902	Potato	cytosol	8.91	39.62
PGSC0003DMT400031154	Potato	nucleus	23.48	39.62
TraesCS3A01G055100.2	Wheat	cytosol	37.48	38.57
PGSC0003DMT400021880	Potato	nucleus	28.57	37.76
KRH14961	Soybean	nucleus	34.94	36.98
CDY53090	Canola	nucleus	26.59	36.86
Solyc09g014490.2.1	Tomato	nucleus	27.58	36.45
PGSC0003DMT400031157	Potato	nucleus	7.78	35.48
CDY22176	Canola	nucleus	25.74	35.27
AT3G09000.1	Thale cress	nucleus	26.87	35.12
Bra029739.1-P	Field mustard	nucleus	26.17	34.97
Bra034046.1-P	Field mustard	nucleus	25.46	34.95
CDY44674	Canola	nucleus	26.03	34.78
KRH73177	Soybean	nucleus	33.52	34.25
AT5G01280.1	Thale cress	mitochondrion, nucleus	22.49	32.85
CDY55901	Canola	nucleus	23.48	32.81
Bra028894.1-P	Field mustard	nucleus	23.48	32.81
CDY48118	Canola	nucleus	23.34	32.61
AT2G38160.3	Thale cress	nucleus	14.43	31.88
CDX93325	Canola	nucleus	14.85	31.63
GSMUA_Achr10P...	Banana	mitochondrion	9.9	25.74
Bra017135.1-P	Field mustard	nucleus	13.44	24.87
CDY18403	Canola	nucleus	13.44	24.87
GSMUA_Achr6P25180_001	Banana	cytosol	18.81	22.93
GSMUA_Achr3P09700_001	Banana	cytosol	14.85	21.97
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	12.02	17.31
GSMUA_Achr2P20960_001	Banana	nucleus	15.7	11.13
GSMUA_Achr3P17040_001	Banana	nucleus	15.56	10.2
GSMUA_Achr6P12380_001	Banana	nucleus	15.56	9.3

Protein Annotations

EnsemblPlants:GSMUA_Achr5P28870_001	EnsemblPlants:GSMUA_Achr5T28870_001	EnsemblPlantsGene:GSMUA_Achr5G28870_001	PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	SEG:seg
UniParc:UPI000295DACF	UniProt:M0T2L1	MapMan:35.2	:	:	:

Description

retrotransposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G28870_001]

Coordinates

chr5:+:28852755..28857375

Molecular Weight (calculated)

77576.0 Da

IEP (calculated)

11.214

GRAVY (calculated)

-0.537

Length

707 amino acids

Sequence
(BLAST)

001: MNRSLRRPAP GSTLTKETDE ELALFIEMRK LEKERRDLRL HSTGELDPPL GSKPGSAPKF RIGASAPARK AGIDDFLNSN NGKNDYDWLL TPPGTPLFLS
101: LDTDSKRSPT RENGIPKARP TVLRSRWFRQ KFNRSIIPSN QVMAIHLYLH YILNYNHTSD QIISGTNIFH ICWRMCMHIY IYLANAPNPS RNLLASRQPP
201: SYSVLNSSAA ATRRPSSSGG PTHGVSRPAT PTGSPALPAV SKPARPSTPT SRATLPSRSS APPSRSSTPV RSSTPTARPS VSAANKPASR STTPTRRPSA
301: PSTAPVSSAP PRRSSSVTRS GSTISRSSAP PCGSSPTIKP RPLKPSDIPG FSLDTPPNLR TSLSERPSSA SRGRPGGPSS RSSSVEPGPN VRPRRQSCSP
401: SRGRVSNGNA HKGGSVQAPS KRQARDGDNS NPVVLGNRMV ERTANVRRLA PPKQDNQRLT NDNLSGKTCV SPDSTGFGRS LSKQSLDMAF RHMDIRRSIP
501: NSLRPLMANI PASSVYSVRS GSTRSRTVSA SGSPLTTSST TSSEQSVNNN MTCLGRNEIE DDLTSDKGVD ALVSLMNCHQ NSYKRSLFWD YWMTLHVILF
601: DLCQTASCWY LRFNLTSCFH IQRSGMQLRD SSFSLYDLSP IDFISMRAAV FRYYGHLRIL FCFFLCSFRI WKDDPNPIHS ACYFGIWIIR IQATETVFLC
701: LLKGGLI

Best Arabidopsis Sequence Match ( AT2G40070.1 )
(BLAST)

001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR

Arabidopsis Description

At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.