Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93325 | Canola | nucleus | 53.12 | 51.2 |
| Bra017135.1-P | Field mustard | nucleus | 46.25 | 38.74 |
| CDY18403 | Canola | nucleus | 45.94 | 38.48 |
| KRH00210 | Soybean | nucleus | 40.31 | 25.05 |
| KRH49356 | Soybean | nucleus | 39.38 | 24.47 |
| VIT_08s0007g02160.t01 | Wine grape | nucleus | 38.12 | 22.26 |
| GSMUA_Achr6P33750_001 | Banana | cytosol, mitochondrion | 34.69 | 21.81 |
| PGSC0003DMT400021880 | Potato | nucleus | 35.31 | 21.12 |
| Solyc09g014490.2.1 | Tomato | nucleus | 34.69 | 20.75 |
| Os01t0141900-01 | Rice | nucleus | 39.06 | 20.63 |
| AT3G09000.1 | Thale cress | nucleus | 34.69 | 20.52 |
| EES02509 | Sorghum | nucleus | 38.12 | 20.33 |
| Zm00001d039901_P003 | Maize | nucleus | 37.5 | 20.0 |
| AT5G01280.1 | Thale cress | mitochondrion, nucleus | 29.38 | 19.42 |
| GSMUA_Achr8P02330_001 | Banana | cytosol | 36.25 | 19.4 |
| AT2G40070.1 | Thale cress | nucleus | 35.62 | 18.78 |
| HORVU3Hr1G010470.4 | Barley | cytosol, nucleus | 35.62 | 18.66 |
| TraesCS3D01G054400.1 | Wheat | cytosol | 35.62 | 18.07 |
| TraesCS3B01G067400.1 | Wheat | nucleus | 35.62 | 18.04 |
| GSMUA_Achr10P... | Banana | nucleus | 30.62 | 17.41 |
| TraesCS3A01G055100.2 | Wheat | cytosol | 36.56 | 17.03 |
| GSMUA_Achr5P28870_001 | Banana | cytosol | 31.88 | 14.43 |
| AT3G08670.1 | Thale cress | mitochondrion | 20.31 | 11.46 |
| AT1G27850.1 | Thale cress | nucleus | 19.38 | 5.4 |
Protein Annotations
| ArrayExpress:AT2G38160 | EnsemblPlants:AT2G38160.3 | EnsemblPlantsGene:AT2G38160 | EntrezGene:818394 | PANTHER:PTHR31949 | PANTHER:PTHR31949:SF1 |
| ProteinID:ANM62700.1 | ProteinID:ANM62703.1 | ProteinID:OAP09805.1 | RefSeq:AT2G38160 | RefSeq:AT2G38160-TAIR-G | RefSeq:NP_001324841.1 |
| RefSeq:NP_001324844.1 | SEG:seg | TAIR:AT2G38160 | UniParc:UPI0007DFB062 | UniProt:A0A178VX31 | UniProt:A0A1P8B1C2 |
| MapMan:35.2 | : | : | : | : | : |
Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.2); Has 972 Blast hits to 731 proteins in 211 species: Archae - 0; Bacteria - 236; Metazoa - 194; Fungi - 201; Plants - 218; Viruses - 32; Other Eukaryotes /.../source: NCBI BLink). [Source:TAIR;Acc:AT2G38160]
Coordinates
chr2:-:15986390..15988775
Molecular Weight (calculated)
35090.8 Da
IEP (calculated)
11.071
GRAVY (calculated)
-0.715
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MENVVVVRDG DEELSLFLEM RRREKLQGVS SLSQPGANSV EKTSTKSLEL LKTSCVKLRR SSVEKFLDSE NDKSDYEWLL AAPEITLLGG KENSMVKLKE
101: PKAKSTALKQ RVENIPQEPL TRSVKVSKPT PRTVSSKQAN TAAEVKPSIK PSRQATPTSR ATLPSTRLTN SAQKSNSESI TTSIKSNTRA SAFPRSSSVG
201: KSVSSAKCTT PKIPETRARP VSTSRSRVYS SGDRSTGRSK ISNDVNPVLM GTQMVERVVN MRKLPPPKHD DNTTLGFGRT LSRSSLDMAL RHMNIRHSVS
301: KNLRVTVSAS TNSMDKNESS
101: PKAKSTALKQ RVENIPQEPL TRSVKVSKPT PRTVSSKQAN TAAEVKPSIK PSRQATPTSR ATLPSTRLTN SAQKSNSESI TTSIKSNTRA SAFPRSSSVG
201: KSVSSAKCTT PKIPETRARP VSTSRSRVYS SGDRSTGRSK ISNDVNPVLM GTQMVERVVN MRKLPPPKHD DNTTLGFGRT LSRSSLDMAL RHMNIRHSVS
301: KNLRVTVSAS TNSMDKNESS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.