Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004992.1-P | Field mustard | nucleus | 78.58 | 80.98 |
| CDY60338 | Canola | nucleus | 80.07 | 79.67 |
| CDY07628 | Canola | nucleus | 79.74 | 79.47 |
| Bra000164.1-P | Field mustard | nucleus | 79.74 | 79.47 |
| CDY20509 | Canola | cytosol | 76.77 | 77.54 |
| CDX74811 | Canola | nucleus | 74.79 | 77.21 |
| PGSC0003DMT400069903 | Potato | cytosol, nucleus, plastid | 17.63 | 66.88 |
| PGSC0003DMT400059907 | Potato | plastid | 18.78 | 65.14 |
| VIT_13s0067g00570.t01 | Wine grape | nucleus | 57.33 | 63.85 |
| KRG97756 | Soybean | nucleus | 60.46 | 61.06 |
| KRH31123 | Soybean | nucleus | 60.3 | 59.13 |
| Solyc03g096090.2.1 | Tomato | plastid | 44.48 | 55.56 |
| GSMUA_Achr6P33750_001 | Banana | cytosol, mitochondrion | 45.14 | 53.83 |
| PGSC0003DMT400069902 | Potato | cytosol | 13.51 | 51.57 |
| Os01t0141900-01 | Rice | nucleus | 51.24 | 51.32 |
| PGSC0003DMT400031157 | Potato | nucleus | 12.85 | 50.32 |
| EES02509 | Sorghum | nucleus | 49.09 | 49.67 |
| Zm00001d039901_P003 | Maize | nucleus | 49.09 | 49.67 |
| GSMUA_Achr10P... | Banana | nucleus | 45.96 | 49.56 |
| GSMUA_Achr8P02330_001 | Banana | cytosol | 48.43 | 49.16 |
| KRH14961 | Soybean | nucleus | 53.54 | 48.65 |
| HORVU3Hr1G010470.4 | Barley | cytosol, nucleus | 47.12 | 46.81 |
| KRH73177 | Soybean | nucleus | 53.21 | 46.68 |
| TraesCS3D01G054400.1 | Wheat | cytosol | 47.28 | 45.48 |
| TraesCS3B01G067400.1 | Wheat | nucleus | 47.28 | 45.41 |
| PGSC0003DMT400031154 | Potato | nucleus | 31.14 | 45.11 |
| AT3G09000.1 | Thale cress | nucleus | 39.21 | 43.99 |
| TraesCS3A01G055100.2 | Wheat | cytosol | 47.94 | 42.36 |
| AT5G01280.1 | Thale cress | mitochondrion, nucleus | 33.28 | 41.74 |
| GSMUA_Achr5P28870_001 | Banana | cytosol | 42.01 | 36.07 |
| AT2G38160.3 | Thale cress | nucleus | 18.78 | 35.62 |
| AT3G08670.1 | Thale cress | mitochondrion | 24.88 | 26.63 |
| AT1G27850.1 | Thale cress | nucleus | 19.44 | 10.28 |
Protein Annotations
| MapMan:35.2 | EntrezGene:818595 | UniProt:A0A178VZ51 | ProteinID:AEC09771.1 | ProteinID:AEC09772.1 | EMBL:AK226897 |
| ArrayExpress:AT2G40070 | EnsemblPlantsGene:AT2G40070 | RefSeq:AT2G40070 | TAIR:AT2G40070 | RefSeq:AT2G40070-TAIR-G | EnsemblPlants:AT2G40070.1 |
| TAIR:AT2G40070.1 | Unigene:At.43580 | EMBL:BT023732 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0005875 | GO:GO:0008150 | RefSeq:NP_001078028.1 |
| RefSeq:NP_181536.3 | ProteinID:OAP10102.1 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31949 | PANTHER:PTHR31949:SF1 | UniProt:Q494P4 |
| UniParc:UPI000034EE4B | SEG:seg | : | : | : | : |
Description
At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
Coordinates
chr2:-:16728193..16731736
Molecular Weight (calculated)
64162.9 Da
IEP (calculated)
11.845
GRAVY (calculated)
-0.838
Length
607 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.