Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029708.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 71.96 | 72.08 |
| CDY35995 | Canola | nucleus | 72.66 | 67.87 |
| CDY27987 | Canola | nucleus | 72.49 | 67.49 |
| VIT_08s0056g00640.t01 | Wine grape | nucleus | 54.85 | 54.56 |
| PGSC0003DMT400005965 | Potato | nucleus | 49.91 | 50.09 |
| Solyc06g054690.2.1 | Tomato | nucleus | 49.74 | 50.0 |
| KRH00491 | Soybean | mitochondrion, nucleus | 51.5 | 49.91 |
| KRH40665 | Soybean | nucleus | 50.97 | 49.32 |
| KRH09557 | Soybean | mitochondrion | 35.27 | 40.4 |
| GSMUA_Achr6P25180_001 | Banana | cytosol | 39.68 | 38.79 |
| KRH64866 | Soybean | cytosol | 30.34 | 37.89 |
| GSMUA_Achr3P09700_001 | Banana | cytosol | 29.81 | 35.36 |
| KXG22223 | Sorghum | nucleus | 34.39 | 33.8 |
| Zm00001d038489_P001 | Maize | nucleus | 34.04 | 33.39 |
| Zm00001d043074_P001 | Maize | cytosol | 32.28 | 33.09 |
| Zm00001d012515_P002 | Maize | nucleus | 31.75 | 32.67 |
| TraesCS3A01G342200.1 | Wheat | nucleus | 31.57 | 32.43 |
| Os05t0480600-01 | Rice | cytosol | 33.69 | 32.37 |
| TraesCS3D01G336100.1 | Wheat | nucleus | 31.39 | 32.25 |
| EES01661 | Sorghum | nucleus | 31.57 | 32.19 |
| HORVU3Hr1G080730.1 | Barley | nucleus | 31.22 | 32.18 |
| TraesCS3B01G374300.1 | Wheat | nucleus | 30.86 | 31.7 |
| Zm00001d010620_P001 | Maize | nucleus | 31.75 | 31.2 |
| TraesCS1A01G302000.1 | Wheat | nucleus | 32.8 | 30.39 |
| Os01t0819000-02 | Rice | nucleus | 30.34 | 29.71 |
| TraesCS1B01G311900.2 | Wheat | nucleus | 32.63 | 29.04 |
| AT5G01280.1 | Thale cress | mitochondrion, nucleus | 21.52 | 25.21 |
| AT2G40070.1 | Thale cress | nucleus | 26.63 | 24.88 |
| AT3G09000.1 | Thale cress | nucleus | 23.28 | 24.4 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 20.99 | 24.24 |
| AT2G38160.3 | Thale cress | nucleus | 11.46 | 20.31 |
| AT1G27850.1 | Thale cress | nucleus | 21.16 | 10.45 |
Protein Annotations
| MapMan:35.2 | EntrezGene:820014 | ProteinID:AAG51356.1 | ProteinID:AEE74661.1 | EMBL:AK230411 | ArrayExpress:AT3G08670 |
| EnsemblPlantsGene:AT3G08670 | RefSeq:AT3G08670 | TAIR:AT3G08670 | RefSeq:AT3G08670-TAIR-G | EnsemblPlants:AT3G08670.1 | TAIR:AT3G08670.1 |
| EMBL:BT010569 | GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 | RefSeq:NP_187479.1 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31949 | PANTHER:PTHR31949:SF2 | UniProt:Q9C9Y9 |
| UniParc:UPI000009F184 | SEG:seg | : | : | : | : |
Description
At3g08670 [Source:UniProtKB/TrEMBL;Acc:Q9C9Y9]
Coordinates
chr3:+:2633663..2637056
Molecular Weight (calculated)
60142.5 Da
IEP (calculated)
11.680
GRAVY (calculated)
-0.806
Length
567 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRNLRESLA GGRNIPAISQ FRRGNNNNSN NISQNGFSRD SDENLDLFSK IRRSFPLASS DELPDVSAKL GRLSVGSKIA PKGKDDLLSS AEGGKNDYDW
101: LLTPPGTPLG NDSHSSLAAP KIASSARASS ASKASRLSVS QSESGYHSSR PARSSSVTRP SISTSQYSSF TSGRSPSSIL NTSSASVSSY IRPSSPSSRS
201: SSSARPSTPT RTSSASRSST PSRIRPGSSS SSMDKARPSL SSRPSTPTSR PQLSASSPNI IASRPNSRPS TPTRRSPSST SLSATSGPTI SGGRAASNGR
301: TGPSLSRPSS PGPRVRNTPQ QPIVLADFPL DTPPNLRTSL PDRPISAGRS RPVGGSSMAK ASPEPKGPIT RRNSSPIVTR GRLTETQGKG RFGGNGQHLT
401: DAPEPRRISN VSDITSRRTV KTSTTVTDNN NGLGRSFSKS SLDMAIRHMD IRNGKTNGCA LSTTTLFPQS IRPASSKIQP IRSGNNHSDS ISSNGTENGN
501: EANEGRRLMG KLSDMDMYES SRYDALLLKE DVKNTNWLHS IDDRSSDHGL MFDNGGFELL PEPFAPL
101: LLTPPGTPLG NDSHSSLAAP KIASSARASS ASKASRLSVS QSESGYHSSR PARSSSVTRP SISTSQYSSF TSGRSPSSIL NTSSASVSSY IRPSSPSSRS
201: SSSARPSTPT RTSSASRSST PSRIRPGSSS SSMDKARPSL SSRPSTPTSR PQLSASSPNI IASRPNSRPS TPTRRSPSST SLSATSGPTI SGGRAASNGR
301: TGPSLSRPSS PGPRVRNTPQ QPIVLADFPL DTPPNLRTSL PDRPISAGRS RPVGGSSMAK ASPEPKGPIT RRNSSPIVTR GRLTETQGKG RFGGNGQHLT
401: DAPEPRRISN VSDITSRRTV KTSTTVTDNN NGLGRSFSKS SLDMAIRHMD IRNGKTNGCA LSTTTLFPQS IRPASSKIQP IRSGNNHSDS ISSNGTENGN
501: EANEGRRLMG KLSDMDMYES SRYDALLLKE DVKNTNWLHS IDDRSSDHGL MFDNGGFELL PEPFAPL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.