Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G336100.1 | Wheat | nucleus | 93.48 | 93.48 |
| TraesCS3A01G342200.1 | Wheat | nucleus | 93.48 | 93.48 |
| HORVU3Hr1G080730.1 | Barley | nucleus | 91.85 | 92.18 |
| Zm00001d043074_P001 | Maize | cytosol | 68.3 | 68.17 |
| EES01661 | Sorghum | nucleus | 68.12 | 67.63 |
| Zm00001d012515_P002 | Maize | nucleus | 65.22 | 65.34 |
| Os01t0819000-02 | Rice | nucleus | 67.21 | 64.08 |
| TraesCS1B01G311900.2 | Wheat | nucleus | 58.51 | 50.71 |
| GSMUA_Achr6P25180_001 | Banana | cytosol | 44.2 | 42.07 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 29.17 | 32.79 |
| KRH00491 | Soybean | mitochondrion, nucleus | 34.42 | 32.48 |
| VIT_08s0056g00640.t01 | Wine grape | nucleus | 33.51 | 32.46 |
| KRH09557 | Soybean | mitochondrion | 28.99 | 32.32 |
| PGSC0003DMT400005965 | Potato | nucleus | 32.97 | 32.21 |
| Solyc06g054690.2.1 | Tomato | nucleus | 32.79 | 32.09 |
| KRH40665 | Soybean | nucleus | 34.06 | 32.08 |
| AT3G08670.1 | Thale cress | mitochondrion | 31.7 | 30.86 |
| KRH64866 | Soybean | cytosol | 25.36 | 30.84 |
| Bra029708.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 30.98 | 30.21 |
| CDX73938 | Canola | nucleus | 29.53 | 30.19 |
| CDY00658 | Canola | nucleus | 28.99 | 29.63 |
| Bra001348.1-P | Field mustard | nucleus | 28.62 | 29.21 |
| CDY35995 | Canola | nucleus | 30.62 | 27.84 |
| CDY27987 | Canola | nucleus | 30.43 | 27.59 |
| TraesCS3B01G067400.1 | Wheat | nucleus | 24.09 | 21.04 |
| TraesCS5B01G121900.1 | Wheat | nucleus | 16.85 | 7.87 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G374300.1 | EnsemblPlantsGene:TraesCS3B01G374300 | PANTHER:PTHR31949 | PANTHER:PTHR31949:SF5 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr3B:+:587427719..587432930
Molecular Weight (calculated)
58557.8 Da
IEP (calculated)
11.634
GRAVY (calculated)
-0.830
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MEELLGTEIG KHDYDWLLTP PGTPRAPALE VAEKAPPSNV PKRTITRSSS TTRASRLSVH ETENGHSAAP NRPVRSMSRP SNRSSVLTPS ISSVSSRPTT
101: PTKSTSTLPS SKPSAPASRP VAARSSTPVK TRPPTPVKTR PSTPVKNCPY GSGSMANSTS VKTTSAQNSR SSTPTSRPRS VSSSSSSTAP SVSRPSSSSG
201: RIPAIVRTSS SSSTASVTRS SSRSSTPTRQ PVMRPSAPSI ARSPSVGRIS GSNNLTSSGR SAASRGRMSA PSSAPSSRPS SPNTRPRAPV RPLDIPDFPS
301: DTPPNLRTKL PERPLSAGRA RPGIGLGTRS TLNAEPVTSA PVKKISVPAI TRNKFSDAPS KTPSLTNGHQ NRQTERSVMD SQPARPSRSA TSEENGFGRT
401: ISRKSLDMAI RHMDIRHNLG GIRGASLFPH SIRSSAPKGR SARMSDPGHH TSNAEQDAYT DSGSINGQFS GDSIGALSHY GGSSTDSPDR ESMGTKETLS
501: ELDMYGSSRY EEMLLREDTK NTDWLHSVDD KSDQSPVFDH RFEPLPEPFG PL
101: PTKSTSTLPS SKPSAPASRP VAARSSTPVK TRPPTPVKTR PSTPVKNCPY GSGSMANSTS VKTTSAQNSR SSTPTSRPRS VSSSSSSTAP SVSRPSSSSG
201: RIPAIVRTSS SSSTASVTRS SSRSSTPTRQ PVMRPSAPSI ARSPSVGRIS GSNNLTSSGR SAASRGRMSA PSSAPSSRPS SPNTRPRAPV RPLDIPDFPS
301: DTPPNLRTKL PERPLSAGRA RPGIGLGTRS TLNAEPVTSA PVKKISVPAI TRNKFSDAPS KTPSLTNGHQ NRQTERSVMD SQPARPSRSA TSEENGFGRT
401: ISRKSLDMAI RHMDIRHNLG GIRGASLFPH SIRSSAPKGR SARMSDPGHH TSNAEQDAYT DSGSINGQFS GDSIGALSHY GGSSTDSPDR ESMGTKETLS
501: ELDMYGSSRY EEMLLREDTK NTDWLHSVDD KSDQSPVFDH RFEPLPEPFG PL
001: MNRNLRESLA GGRNIPAISQ FRRGNNNNSN NISQNGFSRD SDENLDLFSK IRRSFPLASS DELPDVSAKL GRLSVGSKIA PKGKDDLLSS AEGGKNDYDW
101: LLTPPGTPLG NDSHSSLAAP KIASSARASS ASKASRLSVS QSESGYHSSR PARSSSVTRP SISTSQYSSF TSGRSPSSIL NTSSASVSSY IRPSSPSSRS
201: SSSARPSTPT RTSSASRSST PSRIRPGSSS SSMDKARPSL SSRPSTPTSR PQLSASSPNI IASRPNSRPS TPTRRSPSST SLSATSGPTI SGGRAASNGR
301: TGPSLSRPSS PGPRVRNTPQ QPIVLADFPL DTPPNLRTSL PDRPISAGRS RPVGGSSMAK ASPEPKGPIT RRNSSPIVTR GRLTETQGKG RFGGNGQHLT
401: DAPEPRRISN VSDITSRRTV KTSTTVTDNN NGLGRSFSKS SLDMAIRHMD IRNGKTNGCA LSTTTLFPQS IRPASSKIQP IRSGNNHSDS ISSNGTENGN
501: EANEGRRLMG KLSDMDMYES SRYDALLLKE DVKNTNWLHS IDDRSSDHGL MFDNGGFELL PEPFAPL
101: LLTPPGTPLG NDSHSSLAAP KIASSARASS ASKASRLSVS QSESGYHSSR PARSSSVTRP SISTSQYSSF TSGRSPSSIL NTSSASVSSY IRPSSPSSRS
201: SSSARPSTPT RTSSASRSST PSRIRPGSSS SSMDKARPSL SSRPSTPTSR PQLSASSPNI IASRPNSRPS TPTRRSPSST SLSATSGPTI SGGRAASNGR
301: TGPSLSRPSS PGPRVRNTPQ QPIVLADFPL DTPPNLRTSL PDRPISAGRS RPVGGSSMAK ASPEPKGPIT RRNSSPIVTR GRLTETQGKG RFGGNGQHLT
401: DAPEPRRISN VSDITSRRTV KTSTTVTDNN NGLGRSFSKS SLDMAIRHMD IRNGKTNGCA LSTTTLFPQS IRPASSKIQP IRSGNNHSDS ISSNGTENGN
501: EANEGRRLMG KLSDMDMYES SRYDALLLKE DVKNTNWLHS IDDRSSDHGL MFDNGGFELL PEPFAPL
Arabidopsis Description
At3g08670 [Source:UniProtKB/TrEMBL;Acc:Q9C9Y9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.