Factsheet for PGSC0003DMT400005965

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g054690.2.1	Tomato	nucleus	96.64	96.81
VIT_08s0056g00640.t01	Wine grape	nucleus	52.57	52.11
AT3G08670.1	Thale cress	mitochondrion	50.09	49.91
CDY00658	Canola	nucleus	47.61	49.81
KRH40665	Soybean	nucleus	50.44	48.63
KRH00491	Soybean	mitochondrion, nucleus	50.09	48.38
CDX73938	Canola	nucleus	46.19	48.33
Bra001348.1-P	Field mustard	nucleus	44.78	46.77
Bra029708.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	46.73	46.64
CDY35995	Canola	nucleus	46.37	43.16
CDY27987	Canola	nucleus	45.49	42.2
KRH09557	Soybean	mitochondrion	36.64	41.82
KRH64866	Soybean	cytosol	32.39	40.31
GSMUA_Achr6P25180_001	Banana	cytosol	39.65	38.62
GSMUA_Achr3P09700_001	Banana	cytosol	30.27	35.77
TraesCS3D01G336100.1	Wheat	nucleus	32.92	33.7
TraesCS3A01G342200.1	Wheat	nucleus	32.57	33.33
HORVU3Hr1G080730.1	Barley	nucleus	32.21	33.09
TraesCS3B01G374300.1	Wheat	nucleus	32.21	32.97
Zm00001d043074_P001	Maize	cytosol	32.21	32.91
Zm00001d038489_P001	Maize	nucleus	33.63	32.87
Zm00001d010620_P001	Maize	nucleus	33.45	32.76
KXG22223	Sorghum	nucleus	33.45	32.76
Zm00001d012515_P002	Maize	nucleus	31.68	32.49
EES01661	Sorghum	nucleus	31.86	32.37
Os05t0480600-01	Rice	cytosol	33.81	32.37
TraesCS1A01G302000.1	Wheat	nucleus	35.04	32.35
TraesCS1B01G311900.2	Wheat	nucleus	35.93	31.87
Os01t0819000-02	Rice	nucleus	32.21	31.43
PGSC0003DMT400031154	Potato	nucleus	21.06	28.4
PGSC0003DMT400021880	Potato	nucleus	23.89	25.23
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	21.77	25.05
PGSC0003DMT400059907	Potato	plastid	7.43	24.0
PGSC0003DMT400069902	Potato	cytosol	6.37	22.64
PGSC0003DMT400031157	Potato	nucleus	6.19	22.58
PGSC0003DMT400069903	Potato	cytosol, nucleus, plastid	6.19	21.88
PGSC0003DMT400045033	Potato	nucleus	19.29	9.6

Protein Annotations

EnsemblPlants:PGSC0003DMT400005965	EnsemblPlantsGene:PGSC0003DMG400002318	EntrezGene:102589680	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
PANTHER:PTHR31949	PANTHER:PTHR31949:SF2	PGSC:PGSC0003DMG400002318	RefSeq:XP_006353835.1	SEG:seg	UniParc:UPI000296861F
UniProt:M0ZQM4	MapMan:35.2	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002318]

Coordinates

chr9:-:42227031..42231012

Molecular Weight (calculated)

60360.6 Da

IEP (calculated)

11.211

GRAVY (calculated)

-0.839

Length

565 amino acids

Sequence
(BLAST)

001: MNRSFRDSLI TGKNFPISSQ HRRGLSLNGA SREPDDNLDL FSKSRRSVSV ASSDETDVTV KLGRLSIGSV KQLKSGLEDL LASTEGEKHD YDWLLTPPGT
101: PLVPTSDGSE SKPASVGPRG SSLGRSASTT KASRLSVSQS ESNTPARPTR SNSVTRPSIS SSQYCTYSNK SGSILNTSSA SVSSYIRPST PTSRSSSSAR
201: PSTPTSRATV SRPSTPSKAR QAPSTSRPTQ SSRPSTPTSR PQISGNLSTP SRPTSRPSTP TRRTITPSLS PASRSSTPAG RPVTNGRTAA SLSRPSSPSP
301: QVRRPSQPIV PPDFSLETPP NLRTTLPDRP LSAGRSRPNP SVTTKGNAEA PSVANPRRQS SPIVSRGRLT EPSGRGRVLG SGQLSDISDS RRASHVSELS
401: TRKPVKTAAD NMGLGRTISK KSLDVAIRHM DIRNGINGVR PSSGSTLFPH SIRSTNGKGQ PSHGSTGASS FNENASYHYN GNLPENGNYL NRSSENGSEE
501: AKSQHSAKLT DIDIYESSRY DVLLLKEDLK NTNWLHSIDD KSDQETIFGN GFESLPEPFS PLQYL

Best Arabidopsis Sequence Match ( AT3G08670.1 )
(BLAST)

001: MNRNLRESLA GGRNIPAISQ FRRGNNNNSN NISQNGFSRD SDENLDLFSK IRRSFPLASS DELPDVSAKL GRLSVGSKIA PKGKDDLLSS AEGGKNDYDW
101: LLTPPGTPLG NDSHSSLAAP KIASSARASS ASKASRLSVS QSESGYHSSR PARSSSVTRP SISTSQYSSF TSGRSPSSIL NTSSASVSSY IRPSSPSSRS
201: SSSARPSTPT RTSSASRSST PSRIRPGSSS SSMDKARPSL SSRPSTPTSR PQLSASSPNI IASRPNSRPS TPTRRSPSST SLSATSGPTI SGGRAASNGR
301: TGPSLSRPSS PGPRVRNTPQ QPIVLADFPL DTPPNLRTSL PDRPISAGRS RPVGGSSMAK ASPEPKGPIT RRNSSPIVTR GRLTETQGKG RFGGNGQHLT
401: DAPEPRRISN VSDITSRRTV KTSTTVTDNN NGLGRSFSKS SLDMAIRHMD IRNGKTNGCA LSTTTLFPQS IRPASSKIQP IRSGNNHSDS ISSNGTENGN
501: EANEGRRLMG KLSDMDMYES SRYDALLLKE DVKNTNWLHS IDDRSSDHGL MFDNGGFELL PEPFAPL

Arabidopsis Description

At3g08670 [Source:UniProtKB/TrEMBL;Acc:Q9C9Y9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.