Factsheet for PGSC0003DMT400069902

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031157	Potato	nucleus	50.94	52.26
PGSC0003DMT400031154	Potato	nucleus	53.46	20.29
VIT_13s0067g00570.t01	Wine grape	nucleus	59.75	17.43
KRG97756	Soybean	nucleus	59.75	15.81
KRH31123	Soybean	nucleus	58.49	15.02
CDY20509	Canola	cytosol	52.2	13.81
CDX74811	Canola	nucleus	50.31	13.61
Bra004992.1-P	Field mustard	nucleus	50.31	13.58
AT2G40070.1	Thale cress	nucleus	51.57	13.51
Bra000164.1-P	Field mustard	nucleus	49.06	12.81
CDY07628	Canola	nucleus	49.06	12.81
CDY60338	Canola	nucleus	48.43	12.62
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	38.99	12.18
GSMUA_Achr8P02330_001	Banana	cytosol	44.03	11.71
GSMUA_Achr10P...	Banana	nucleus	37.74	10.66
KRH14961	Soybean	nucleus	44.65	10.63
KRH73177	Soybean	nucleus	45.28	10.4
Os01t0141900-01	Rice	nucleus	38.99	10.23
EES02509	Sorghum	nucleus	38.36	10.17
Zm00001d039901_P003	Maize	nucleus	37.74	10.0
GSMUA_Achr5P28870_001	Banana	cytosol	39.62	8.91
TraesCS3B01G067400.1	Wheat	nucleus	35.22	8.86
PGSC0003DMT400021880	Potato	nucleus	29.56	8.79
TraesCS3D01G054400.1	Wheat	cytosol	34.59	8.72
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	33.33	8.67
TraesCS3A01G055100.2	Wheat	cytosol	34.59	8.01
PGSC0003DMT400005965	Potato	nucleus	22.64	6.37
PGSC0003DMT400045033	Potato	nucleus	29.56	4.14
PGSC0003DMT400069903	Potato	cytosol, nucleus, plastid	0.63	0.62
PGSC0003DMT400059907	Potato	plastid	0.63	0.57

Protein Annotations

EnsemblPlants:PGSC0003DMT400069902	EnsemblPlantsGene:PGSC0003DMG401027184	ncoils:Coil	PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	PGSC:PGSC0003DMG401027184
SEG:seg	UniParc:UPI0002949D8F	UniProt:M1CLC4	MapMan:35.2	:	:

Description

ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401027184]

Coordinates

chr5:-:47993866..47996977

Molecular Weight (calculated)

18546.0 Da

IEP (calculated)

4.912

GRAVY (calculated)

-0.684

Length

159 amino acids

Sequence
(BLAST)

001: MNRSFRAEES ALRELQQQMG SFRNSVMKEK EEELGLFLEM RRREKERNDL LLFQNGDEFD APLESRAGSS PIFNIGSTTN VRKNGTDDFL NADNDKNDYE
101: WLLTPPSTPL FPSLEMESEK SMMSQLGTAK ARPTALRSRV RIYYFYFSYS MIAEIMHFL

Best Arabidopsis Sequence Match ( AT2G38160.3 )
(BLAST)

001: MENVVVVRDG DEELSLFLEM RRREKLQGVS SLSQPGANSV EKTSTKSLEL LKTSCVKLRR SSVEKFLDSE NDKSDYEWLL AAPEITLLGG KENSMVKLKE
101: PKAKSTALKQ RVENIPQEPL TRSVKVSKPT PRTVSSKQAN TAAEVKPSIK PSRQATPTSR ATLPSTRLTN SAQKSNSESI TTSIKSNTRA SAFPRSSSVG
201: KSVSSAKCTT PKIPETRARP VSTSRSRVYS SGDRSTGRSK ISNDVNPVLM GTQMVERVVN MRKLPPPKHD DNTTLGFGRT LSRSSLDMAL RHMNIRHSVS
301: KNLRVTVSAS TNSMDKNESS

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.2); Has 972 Blast hits to 731 proteins in 211 species: Archae - 0; Bacteria - 236; Metazoa - 194; Fungi - 201; Plants - 218; Viruses - 32; Other Eukaryotes /.../source: NCBI BLink). [Source:TAIR;Acc:AT2G38160]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.