CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74811	Canola	nucleus	90.02	92.01
Bra004992.1-P	Field mustard	nucleus	83.69	85.4
AT2G40070.1	Thale cress	nucleus	77.54	76.77
CDY07628	Canola	nucleus	76.54	75.53
CDY60338	Canola	nucleus	76.54	75.41
PGSC0003DMT400069903	Potato	cytosol, nucleus, plastid	16.97	63.75
PGSC0003DMT400059907	Potato	plastid	18.47	63.43
VIT_13s0067g00570.t01	Wine grape	nucleus	55.74	61.47
KRG97756	Soybean	nucleus	58.57	58.57
KRH31123	Soybean	nucleus	58.4	56.7
Solyc03g096090.2.1	Tomato	plastid	43.93	54.32
PGSC0003DMT400069902	Potato	cytosol	13.81	52.2
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	43.43	51.28
PGSC0003DMT400031157	Potato	nucleus	12.81	49.68
Os01t0141900-01	Rice	nucleus	49.58	49.17
Zm00001d039901_P003	Maize	nucleus	49.08	49.17
EES02509	Sorghum	nucleus	48.92	49.0
GSMUA_Achr10P...	Banana	nucleus	44.93	47.96
KRH14961	Soybean	nucleus	53.24	47.9
GSMUA_Achr8P02330_001	Banana	cytosol	47.42	47.66
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	47.09	46.32
TraesCS3D01G054400.1	Wheat	cytosol	47.75	45.48
KRH73177	Soybean	nucleus	52.25	45.38
TraesCS3B01G067400.1	Wheat	nucleus	47.59	45.25
PGSC0003DMT400031154	Potato	nucleus	31.28	44.87
CDY44674	Canola	nucleus	38.44	43.67
CDY53090	Canola	nucleus	36.77	43.33
CDY22176	Canola	nucleus	36.94	43.02
TraesCS3A01G055100.2	Wheat	cytosol	49.08	42.94
CDY55901	Canola	nucleus	34.11	40.51
CDY48118	Canola	nucleus	33.78	40.12
GSMUA_Achr5P28870_001	Banana	cytosol	41.43	35.22
CDX93325	Canola	nucleus	19.13	34.64
CDY18403	Canola	nucleus	17.64	27.75
CDY00658	Canola	nucleus	24.13	26.85
CDX73938	Canola	nucleus	24.13	26.85
CDY27987	Canola	nucleus	25.62	25.29
CDY35995	Canola	nucleus	25.12	24.88
CDX90111	Canola	nucleus	19.47	11.03
CDY11763	Canola	nucleus	19.3	10.78
CDY27635	Canola	nucleus	19.8	10.56
CDX84901	Canola	mitochondrion, nucleus	19.63	10.35

Protein Annotations

EnsemblPlants:CDY20509	EnsemblPlantsGene:GSBRNA2T00012618001	ncoils:Coil	PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	ProteinID:CDY20509
ProteinID:CDY20509.1	SEG:seg	UniParc:UPI0004EDF1E9	UniProt:A0A078G584	MapMan:35.2	:

Description

BnaC04g05350DBnaC04g05350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G584]

Coordinates

chrLK032108:-:630623..633723

Molecular Weight (calculated)

63534.0 Da

IEP (calculated)

11.975

GRAVY (calculated)

-0.928

Length

601 amino acids

Sequence
(BLAST)

001: MNRSFRAQES SLLLDSAARQ RQQLRASMMA EKDEELSLFL EMRRREKEQD SLLLNNNPDE FESPLGSKPG TSPVFNISSG PAPARKTGPP DDFLNSEGDK
101: NDYEWLLTPP GTPLFPSLEM ESHRTMMNQN GDSKGRPATL TSRLANSSSE PAARNHLTSR QPQTSSSNGT TRRPSSSGGP GSRPASSGGP GSRPATPTGR
201: SSSTLTTNSK SSRPSTPTSR SSTTRPSLTN SRSTASATTK PTPMSRSTSS SRLTPTASKP TTRPAGSTAR STTTTRSAGP SRSTTPLSRS TARSSTPTSS
301: RPTLPPPKTI SRSSTPTRRP PSAATTTTSK PSQIKPSSPA AKPTPSKTTP AAASRAPSPT VRSRPWKPSD MPGFSLETPP NLRTTLPERP LSATRGRPGA
401: PSPRSNSVEP AGGGRARRQS CSPSRGRAPM HASGSSVPAV NRGYSKANDN VSPVLMGAKM VERVINMRKL APPRSDEKGS PHGNLSAKSS SPDSAGFGRT
501: LSKKSLDMAI RHMDIRRTIP GNLRPLMTNI PASSMYSVRS GHTRGRPMNV SDSPLATSSN ASSEISVYNN NGVCLEAASE KEDDAGSERG CRSPPASLQG
601: R

Best Arabidopsis Sequence Match ( AT2G40070.1 )
(BLAST)

001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR

Arabidopsis Description

At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.